Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MKLLIVFGLLTSVYCIHKECSIQECCENQPYQIEDPCPIHYYSDWFIKIGSRKSARLVQLCEGDYGKRIPIHYEMFGNYTISCEPLEINCQAPPVGSLIVRCSYDYDFVEHHDVRVVL |
1 | 7jtlA | 0.59 | 0.49 | 0.84 | 5.49 | HHpred | | -----------------QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE--SKSPIQYIDIGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVL |
2 | 7jtlA | 0.59 | 0.49 | 0.83 | 2.48 | MRFsearch | | ------------------ECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDES--KSPIQYIDIGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVL |
3 | 7jtlA | 0.59 | 0.49 | 0.84 | 1.75 | FFAS-3D | | -----------------QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE--SKSPIQYIDIGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVL |
4 | 7jtlA | 0.59 | 0.49 | 0.84 | 3.12 | SPARKS-K | | -----------------QECSLQSCTQHQPYVVDDPCPIHFYSKWYIRVGARKSAPLIELCVDE--SKSPIQYIDIGNYTVSCLPFTINCQEPKLGSLVVRCSFYEDFLEYHDVRVVL |
5 | 1a8jL1 | 0.13 | 0.09 | 0.72 | 0.55 | DisCoVER | | ------------S--------A-------LTQPPSASGSLGQSVTISCTGVGYNYVSWYQQHAGKAPKVIIYEVNSKGNTASLTVSGL-----QADEADYYCSSYEGFVFGTGTKVT- |
6 | 5t50A | 0.08 | 0.07 | 0.81 | 0.83 | DEthreader | | -S-EL--SF--N---Y-PN-FQSVEDIFALHAIFIAP-TSNKV-VAVEFVRSIATAHV-GYDGI-SKILTAFVTYPGGNYVLS-HVVDLAEIFPGDV-RIGFSGQY-IHSW--F-S-- |
7 | 2g18G | 0.08 | 0.08 | 1.00 | 0.79 | CEthreader | | EFISLTSIPSLREQQHPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLELTIENRCYQTPQFRKMHLELAKVGNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSP |
8 | 5necA | 0.10 | 0.08 | 0.86 | 0.70 | EigenThreader | | NPS-------------LIGAP----SGYNCTSLENPNPHDPWNQVNIGARHGVNWQAGLVWKPVPNGSIYASYATSAETTNYELGTKWAFFNERLELSAAIFRTDKDQSRVDGVELSA |
9 | 5fjwA2 | 0.18 | 0.05 | 0.28 | 0.33 | MRFsearch | | -------------------------------------------------------------------------------------LTTAVSPSSQQGFDVIIEYESVETELADVIFTI |
10 | 3rg1C | 0.17 | 0.14 | 0.86 | 0.26 | FFAS-3D | | ----------------HTACLYQSCDPLQDFGFSDQCARQLKPNINIRFGMVLREDIEQVCEVDLPKFSFCGRRKGEQIYYAGPINNPGFEIPEGDYQVLLELYNQDHATVACANATV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|