Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFVSWLCALAIPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG |
1 | 2bg9C | 0.10 | 0.09 | 0.91 | 1.00 | DEthreader | | ------NVLYFFDWQNGEW--PLFYVINFITPCVLISFLALAFY-LPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALVLIYLFIMSLVTGVVVNCGI-VLNFHR |
2 | 3jbrE | 0.07 | 0.07 | 1.00 | 1.01 | SPARKS-K | | TAVVSDHWAVLSEFTTQKEYSISAAAISVFSLGFLIMGTICALMFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIFACACAAFVLLFLGGISLLLFSLPR |
3 | 3dwbA | 0.04 | 0.04 | 0.94 | 1.00 | DEthreader | | GTFSWEQVSTGALPMKA-FAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRK-SAKEKADA-IYNYNEIVFP--AGILQAYNGIGVVVGHEL-THAFDDGREWSV |
4 | 5oybA | 0.05 | 0.05 | 0.91 | 1.00 | DEthreader | | -----IVLYGCRAHFDGCLMELIQLSIIMLGKLIQNNFEIGIPKMKKFDN-LEPF--AG-LTPEYMEMIIQFGFVTLFVAFPLAPLFALLNNIIEIRLDA-KKFVTE |
5 | 5d0yA | 0.11 | 0.11 | 1.00 | 1.01 | SPARKS-K | | LAMVIAIKVVLGQFKVGDATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGGFFIGFTLTAALESMIYGFFLPIQIWRVIASVICVTVILNTLWVSMLGG |
6 | 3dwbA3 | 0.04 | 0.04 | 0.93 | 1.00 | DEthreader | | GTFSWEQVSTGALPMKA-FAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRK-SAKEKADA-IY--NMIVFP--AGILQAYNGIGVVVGHELTHA-FDQGREPWW |
7 | 3rceA4 | 0.07 | 0.05 | 0.70 | 0.87 | DisCoVER | | NETIMEVNT---------------IPEVFMQRI--SFILS--FI--------GFILLCKDHKSMLLALPMLALGF-MALRA-GLRFTIYAVPVMA-LGFGYFLYA-- |
8 | 1xzpA2 | 0.09 | 0.08 | 0.91 | 1.00 | DEthreader | | ----------RDEAKSETLKLSLRNLGGLRDFVDSLRRELIEVLAEIREIETNTGEVVTRLERIKEKLTEELKKADAGILNRTNLRQKQLLENVKGHLEDAIDMASI |
9 | 5aexA | 0.13 | 0.12 | 0.93 | 0.52 | CEthreader | | LWFGWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWT-------TVGLCSGIIAGLVGITPAAGFVP-IWSAVVIGVVTGAGCNLAVDLKSLL |
10 | 6xbwb | 0.07 | 0.07 | 1.00 | 0.72 | EigenThreader | | LGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNSIIFCEAVAIYGIIMGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|