>PF12029 (461 residues) APEHVIENEKALAKAGDDPKKRRKVVRKKAPEGFVAWSEDTFEKLITSEPEPLTSRFRVT HTMLLSVIARPGNAFQAMRHLLEDNHEPRKQQLRHIRRAIAIYRSLLDGGIVEKLDEPDA EGRIVRLTVDLQQDFALNQPLSTFALAAFELLDPESPSYALDMVSVVESTLDDPRQILAA QQNKARGEAVAAMKADGVEYEERMERLQDITYPKPLEELLSHAYNTYRKSHPWVGDHPLS PKSVIRDMYERAMSFTELVSHYELARTEGIVLRYLASAYKALDHTVPDDLKSEDLQDLIE WLGEMVRQVDSSLLDEWEQLANPEEMTAEEAQEKADQVKPVTTNARAFRVLVRNAMFRRV ELAALDQVEELGELDAESGWDAGAWGEAMDKYWDEYEELGTGPDARGPKLLIIEEEPQNG LWRVRQIFDDPNGDHDWGISAEVDLAASDAEGRAVVRVTDV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | APEHVIENEKALAKAGDDPKKRRKVVRKKAPEGFVAWSEDTFEKLITSEPEPLTSRFRVTHTMLLSVIARPGNAFQAMRHLLEDNHEPRKQQLRHIRRAIAIYRSLLDGGIVEKLDEPDAEGRIVRLTVDLQQDFALNQPLSTFALAAFELLDPESPSYALDMVSVVESTLDDPRQILAAQQNKARGEAVAAMKADGVEYEERMERLQDITYPKPLEELLSHAYNTYRKSHPWVGDHPLSPKSVIRDMYERAMSFTELVSHYELARTEGIVLRYLASAYKALDHTVPDDLKSEDLQDLIEWLGEMVRQVDSSLLDEWEQLANPEEMTAEEAQEKADQVKPVTTNARAFRVLVRNAMFRRVELAALDQVEELGELDAESGWDAGAWGEAMDKYWDEYEELGTGPDARGPKLLIIEEEPQNGLWRVRQIFDDPNGDHDWGISAEVDLAASDAEGRAVVRVTDV | |||||||||||||||||||
1 | 2pffB | 0.05 | 0.05 | 0.92 | 0.68 | DisCoVER | VAIFGGQGDDYFEELR-ILEWLYLLSIISCPLIGVIQLAHYRSYLKGATGHQGLTASPMLSIQVEISLVNGAKNLVVSG-PPQSLY----KFSNRFLPVASPFHSHLLVVYDTFDGCIIRLPVKWETTTILDFGPGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GG--GG-GGGGGGGGG-GGGGGGGG-GGGGGGGGG-GGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGG--GG---GGGGGGG--GGGGGGGGGGGGG---GGGGGGGGGGLIPGHSLGEYAALASL- | |||||||||||||
2 | 5agaA | 0.07 | 0.04 | 0.62 | 0.67 | DEthreader | --GLINRLIEENKM-L---------------LLTKICYITRKSASCQA-----AVQIVG---M------------SATLPNLELVASW--AL--PVRSCLQGSMIRAI-LEIIASTSQD-MHTYACTPGSATLSSS----LSPADTLDIFADLQRAMGFVHILYLVTPMFEDWTTIDWYRFFCLWEK--------------------EEGFLAR--VAR-ERQHR-----------MAIKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMIVFNLGWHNMELLLSQFQKRLTFGIQ---------------------------------RELCDLVRV-SLLNA--Q---------------------------------------RARVLYASGFHTVAD-------LARANIVEVEVILRAAVEERMILQQD------------- | |||||||||||||
3 | 6v9iC | 0.07 | 0.07 | 0.94 | 0.79 | CEthreader | QFEDKWDFMRPIVLKLLRQESVTKQ-QWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLNVEDSIVRKLMLDTWNESIFSNI----------------------------KNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEW | |||||||||||||
4 | 2zjaA | 0.11 | 0.07 | 0.65 | 0.97 | EigenThreader | PIIEVHQMLG--------------RAGRPKYDETSDDPREVMNHYIFGKPEKLFSQLSNRSQVLALIATFGYSTVEEILKFISNTFYAYQRTYSLEEKIRNILYFLLENEFIEIS----LEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPN-----PIGIFHLISL-----------------------TPDI-------TPFNYSKREFERLEEEYYEFKDRLYFDDPYIFRAFKTALVLLAWINEVGEIVEKYSVE--PGDIYRIVETAEWLVYSLKEIAKVIVDYLETLRVRVKYGIR------------------------------------------------EELIPLMQLPLVRRARALYNSGFRSIEDISQELLKTVEAIFKFLG------------------------------------------------------------ | |||||||||||||
5 | 4a4zA2 | 0.17 | 0.10 | 0.56 | 0.52 | HHpred | ---TPGEFTQMAGRAGRR---------GLDSTGTVIVSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEAL---RVEEMIKYSFSENAKETSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRV---ACEI----NSGYELVLTELILDNFLGSFEPEEIVALLSVFVYETREPTPRLAKGKQR--------IE----EIYKKMLCVFTHQIPLTQDE-----A-E------FL--DRKRFANVVYE-WARGLSFKEIMEMSPE--AEGTVVRVITWLDEICREVKTASIGNSTLHMKMSRAQELIVFAAS------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 6gmhQ | 0.16 | 0.11 | 0.71 | 0.50 | MRFsearch | --YETMKILGSLYAASEDQEKRDI-------------AKGHLKKVTEQYPD-------------------DVEAWIELAQILEQT--DIQGALSAYGTATRILQEKVQA------------------------------DVPPEILNNVGALHFRAKKYFLASLDRAKAEAEVTTSYNLARLYEAMCERLGAMARDKGNFYEASDWFKEALDREKEKRHQDRALAIYKQVL------FREARDVFAQVREATAQYISAVQMYENCHQNTEVVLYLARALKARHVAPSDTVLMFNVALVLQRLATSVLELAHRYFSYLSKLALAATEARQCSDLLSQAQYHVARAQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNIL------------------------------------------------------------- | |||||||||||||
7 | 5dlqB1 | 0.10 | 0.08 | 0.79 | 0.87 | FFAS-3D | GPPEVIAQLENAAKVLMAPPSMVSNEQRQH-------AEHIFLSFRKSKS---------PFAVCRHILETSKVDYVLIMEAVVRVLLEKGSIESLRTFLLTYVLQVREQ--------------ILLAVAVIVKRGDKSIDCKSIFHEVSQLISSGNPTVQTLACSILTALLSEKRVFQEEDLRQIFMGVLQEFSRRENLSAQMSSVFQRLSWDSDMAQDSLQCLAQLASLHGPIFPDEGSQVDYLAHFIEG---LLNTINGIEIEDSEAVISSIISNLITVVLTAIPSELFSSFVNCLTHLTCSFGRSAADKLLESWLTLVRATRHFLKLVFDMLVLQNTEMTTAAGEAFYTLVCLYQVIYQRLADAFNKLTASSTPDRKQKMAFLKSLEEFMANVGGL-------------------------------------------------------------- | |||||||||||||
8 | 6tc0C | 0.10 | 0.10 | 0.95 | 0.69 | SPARKS-K | VVPSVLQGLRALSMSV-------------------ALPPGLAVSVLKAQEVHVQSLLQVDRHTVFSIITNKGLGADFTFGFIQVMDGEK--DPRNLLLAFRIVHDLISKDYFPIDFTPPPNDPYGIQREDLILSASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVLPSLWASIRREVFQTASERVEAEGLALHSLTACLSCSLLGSFLSNILQDCRHHLCEPDMLLQAAAGASARACEHLTSNVLPLLEQFHKHSQSNQRRTILEMILGFLKLQQKWSDERPLSSFKDQLCSLVFMALTQLQLVGIRTLTVLGAQPGLLSAEDLELAEDSQSCRVALEASGTLATLRCLQALSAVSTHPLLQHLCQANKGNMESSEVVAVCQSLQQVAEKCQQDPESYWYFHKTAVPCLFALAVQASMPLLEDEVLAALASVIGTATTHLSPELAAQSVTCIV | |||||||||||||
9 | 2ot8A | 0.08 | 0.06 | 0.74 | 0.92 | CNFpred | --KCSAAALDVLANVYRD---------------LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGPYLPELIPHLIQCLSKKALVRSITCWTLSRYAHWVVSQTYLKPLM------------TELLKRILDSKRVQEAACSAFATLEEEA-PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH-LNKPEYIQML---------MPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQGFLPYCEPV-----YQRCVNLVQKTLAQAMLN-YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--------KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNFISVCNNATWAIGEISIQMG------------------------------------------------------------- | |||||||||||||
10 | 2zjaA | 0.12 | 0.08 | 0.64 | 0.83 | DEthreader | PASGWRPVK----------------KKKGFRITPRAGVGEGIMNYIFGKPEKLFSQLNNLRSQVLALIAFGYSTVEEILKFISTFYAQRKDTYSLEEKIRNILYFLLENEFIEISLED-----KIRPLSLIRAKLYIDPYTAKMFKDKMEEVVK-D-PNPIGIFHLISLTPITPFNYSKREFE-RL---------------------EEEYYEFKDRLYFDD-YI--S-----L--KFFAFALVLLAWINEVPE-GEIVEKYSVE--PGDIYRIVETAEWLVYSLKEKYEIVDYLETLRVRVKYGI--------------------------------MQLPLVGRRRARALYN-S------------------------------------------------------GFRSIEDISQARP-----------------EELLKIGIGVKTVEA------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |