>PF12027 (255 residues) MLKSEIEQCLSKITSNIRLCAFVIKIGIVDHVMSRLCRFYGSDSIKYCASHYHDPRVIDS ILIGLYGASYSDFSRMSYQVRSNIVYCVGKHGIAGVFKLHNSGFYSELLGMCYDFVHARG KGVKLQELCDFMKLSCSIQLGQMYHMMVKVKCSIGDEQSDIRKLVSQECSVGYLVYRSLL FGRYAYHVRKAFRHLYAPSDKNPVRTVSGLNIPHSLIRLNHRGIFTKIEHCINAEKMSFN VFVVDIVRHIDKLLL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MLKSEIEQCLSKITSNIRLCAFVIKIGIVDHVMSRLCRFYGSDSIKYCASHYHDPRVIDSILIGLYGASYSDFSRMSYQVRSNIVYCVGKHGIAGVFKLHNSGFYSELLGMCYDFVHARGKGVKLQELCDFMKLSCSIQLGQMYHMMVKVKCSIGDEQSDIRKLVSQECSVGYLVYRSLLFGRYAYHVRKAFRHLYAPSDKNPVRTVSGLNIPHSLIRLNHRGIFTKIEHCINAEKMSFNVFVVDIVRHIDKLLL | |||||||||||||||||||
1 | 1k4wA | 0.06 | 0.04 | 0.62 | 0.64 | DisCoVER | ------------IDRIAQNIIKS----------------------------------HL--ET--CQ---------------------------YTMEELLAWQTHAYQSAIQYVVEFAKRITGFMLLKSGCLEVVLVRMCRAF--NPLNNTVLFEGK--Y--GGMQMFKALGSDDLVNEAFDFAKNLC---------SLQLTEEEIALFSSAVLISPDREPRKVQKLQEKI---YFALQHVLIAKIPTITAVC- | |||||||||||||
2 | 4xwhA | 0.07 | 0.05 | 0.68 | 0.67 | DEthreader | ---------------------------VAWSGSQLRLRDWMALN-IAECMLHNFGALNEVVSVTFAARYGVSH-----G---------------GEACRSIWYNRSDVFEAWRLLLTSAPSLATS-PAFRYDLLDLTRQAVQELVSLYY-EEA------------ASLLRAGGVLA-YELLPALDEVLASDSRFLL------------------SWLEQARYEQNSRYQTLWGGNLDYANKQLGLVANQRYPSQP | |||||||||||||
3 | 2x0cA | 0.05 | 0.05 | 0.95 | 0.61 | CEthreader | INDMSYFGCLDSV--MENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCGVSDPNSQAGQQGLVEPTQFARANQAIQMACQSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLASARNPTAKRQFVQSAKEVANSTANLVKTIKALDGDFEENRAQCRAATAPLLEASVPAQISPEGRAAMEPIVISAKTMLE----------SAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAP | |||||||||||||
4 | 4m0mA2 | 0.06 | 0.05 | 0.82 | 0.65 | EigenThreader | -------------------------------DRLSYLQHSLTSIANYYHYHCDEKSVKNLLLERVKESRTKPDSEAIKHLEQTVRQILESKNEKGFL----WQQINVKAALREHLEHNQVLSDTQKEEIRKAREIRREVIELNAKAT---TPEDDNQLTRSHFQKAYFEGDTQKTLNLESLSQTLNQLSSVKEVLNFFNIPLPKL------HSEVKEQIA-DKLKERLVDLKEKGGNDVNAITRELGKAREDLIE | |||||||||||||
5 | 3wozA1 | 0.16 | 0.05 | 0.31 | 0.31 | HHpred | -------------------------------------TEDVAEVLNRCASNWSERK--EGLL-GLQNLLKRTLS--RIELKRLCEIFTR-FADPH------GKVFS-FLETLVDFIQVHKDDLQLTQLLK----------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4fgvA | 0.11 | 0.10 | 0.94 | 0.53 | MRFsearch | --LVTVIKDLLGLTEDNKAVVASNIMYIVGQYPRFLKADTFIKIAKQCRRHFVNEPFIEEIIRNIGKITCDLTPQQVHTFYEACGYMVSAQGNRNQQERLLAELMAIPNAAWDEIIKAATEPDTIKIIGNIMKTNVSPQIGRLYNDMLQMYAA---TSQLISEAVARDGEIATKMPKVRGLRTIKKEILKLVETFVEK-----------AEDLQAVRSQMIPGLLDSVLVDYNRNEDQVPAIMENVFECTLDMIN | |||||||||||||
7 | 3gs3A | 0.07 | 0.05 | 0.84 | 0.91 | FFAS-3D | --RAKVVDWCNELVIASP----STKCELL---------AKVQETVL-----GSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----------KVELLPHVINVVSMLL-----RDNSAQVIKRVIQACG----SIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSFRREKLQEEGNNILDILLQFHGTTHIS-SVNLIACTSSLCTIA- | |||||||||||||
8 | 6w2wA | 0.10 | 0.08 | 0.82 | 0.67 | SPARKS-K | EVNERVKQLAEKAKEATDKEEVIEIVKELAELAKQSVVAEIVYQLAEVAEHSTDPELIKEILQEALRLAEEEAARLALKAARLLEEARQLLSKDPENEAAKLKAVRAALEAALLALLLLAKHPGSQ--AAQDAVQLATAALRAVEAACQLAKQY--------------PNSDIAKKCIKAASEAAEEASKAAEEAQRHPDS---------QKARDEIKEASQKAEEVKERCERA--------------------- | |||||||||||||
9 | 4c0pA | 0.05 | 0.04 | 0.93 | 0.91 | CNFpred | VFLDRLAVIFRHTNP-HPCQKVIQEIPVLSETLNKHIVERCCRCLRFAVRCVGSAALLQPLVTQMVNVYHHQHSCFLYLGSILVDEYGMEEG----CRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQ-----VVIPILQWAIAS-----TTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRK-ELIGQVMNQLGQQLVSQLLHTCCFC--LPPYTLPDVAEVLWEIMQ | |||||||||||||
10 | 4y23A | 0.05 | 0.04 | 0.74 | 0.83 | DEthreader | ---YDGTKETSIINTDKPISMPGGVFMLQMLLILLAETHLSYADRAAYAGDPEVDVPLRGLLDPYIKEQKLISSMNRDVKEGDPWKYEEGEPNYEIVPQ-----G--AT--HF--TVTDQWG--NV--V--SY--TT--TI-EQL-FG--T------GIL-FLNNELTDFDAI-NPLSSMGGTTIIASVFQTILNYF--EYG-MS-----LQDAIEEPESG---------------TFMG--V--AD-SSRNG-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |