>PF12024 (244 residues) SNQDNKKKDKDVLEDKWKNSNSEREQEQIDRAVQESGGKLTRRLANSQCEFERRKPDGTT TLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSS YAPHYDSTFANISKDDSDLIYSTYGEDSGLPSDFSIQEFLATCQDYPYVMADSLLDVLTK GGHSRTLQELETSSPEDEGQSSTCDTAKEMEITEVEPAGRLDSSTQDRLTALKAVTNFGA PIEV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | SNQDNKKKDKDVLEDKWKNSNSEREQEQIDRAVQESGGKLTRRLANSQCEFERRKPDGTTTLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSGLPSDFSIQEFLATCQDYPYVMADSLLDVLTKGGHSRTLQELETSSPEDEGQSSTCDTAKEMEITEVEPAGRLDSSTQDRLTALKAVTNFGAPIEV | |||||||||||||||||||
1 | 6kw5A | 0.14 | 0.11 | 0.81 | 1.32 | HHpred | ---------------------GTRNYQLVDKFYKFSSELLLRECCRIKITYPHELNTNFKINNVLPQT-D----IENEAPRLGFVGAPTLPPTEMMTRFLHPNWYALPTTVWLKYGNYNSWAPSFNENGTVVDSTTRGLIWLERI----IK-LQNLYNW-TPSNEIPDKLVSDSLLKLKRLRKERIL-N--KVLKPTTEERELYFKVKLKEVILAKKV--------SKV-PINNVRAFPVL--- | |||||||||||||
2 | 2pffA1 | 0.06 | 0.05 | 0.88 | 0.72 | DisCoVER | -----GGGGGGGGGGGG--G-G--GG--GGGGGG-GG--G---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVTFKYVLITGLQGGAKVVVTTS----TDYYQSIYAKYGAKGSTLIVVP-FNQ-GSKQDVEALAIIPFAAAQVILP--MSPNHGGMYSESKLCGAITRGTNIIAEGIEGVRTFSQKEMALLGLSPVMADLNGGLQ- | |||||||||||||
3 | 3cf4A | 0.03 | 0.02 | 0.79 | 0.67 | DEthreader | MCDQCHNREFFLVIDYDSKALF-SGSLDHVGMEISDIVQVAYDFPDAPLVEIGMIKFC-GLCCAITRERRPP-YA-KVIGSMVDEQCVRCPEDTCIGCLEAQIAEEKGLMRAIIPYGGTKDVYYIA------RNFIVVTTAFANIG-SCVSNAHITGAEIGILN-----CG-LAW-GAFSQ-KASSI--G------------------------------LGPHSSKYRRALIFLLTTAETWQ- | |||||||||||||
4 | 5zdmA | 0.09 | 0.07 | 0.79 | 0.52 | CEthreader | -----------------------------------------ESFAFGAVVERRDELDGRPWISYPVRVVADTPELVAVHLSHGTRLTFGDDPFSWGPHPWQLFGDRWQSAGILQLHRPGSVWVLRDADTGAFREWYVNVEAPWRRTPTGFSTLDHEIDLVVPADSRTFRWKVEKFEERARIGHPEEATAIRAEAADVAREIAAGEQWWDTRWSRWEPPAGWNALLQSFETEGS----------- | |||||||||||||
5 | 6m5aA | 0.06 | 0.06 | 0.98 | 0.58 | EigenThreader | ANEPNELPDSTKEYEARYTKDAAASYKDSVTTYNKWWVDNAYRWWLSRFNMLDANMPGNYPTSIFMMDTKWFRNPEYSYGTWLSAGDTAKKSKAGYYYYHDNPSYTQYITRAGWDSYKVHGGPSTVAEELADQGAEDVQGLLASKSEPDNNDNQ----NDGSANMWANANAAAQAYKAAGDTANAEKMQAIADKIQKEVTTELFAKYKEINNYYPYSEGLMPTGNLRLFEDSNEFPIFPFFTAN | |||||||||||||
6 | 6k15A | 0.14 | 0.11 | 0.81 | 1.32 | HHpred | ---------------------GTRNYQLVDKFYKFSSELLLRECCRIKITYPHELNTNFKINNVLPQT-D----IENEAPRLGFVGAPTLPPTEMMTRFLHPNWYALPTTVWLKYGNYNSWAPSFNENGTVVDSTTRGLIWLERI----IK-LQNLYNW-TPSNEIPDKLVSDSLLKLKRLRKERIL-N--KVLKPTTEERELYFKVKLKEVILAKKV--------SKV-PINNVRAFPVL--- | |||||||||||||
7 | 6kw5A | 0.18 | 0.14 | 0.75 | 0.97 | MRFsearch | ---EPIQGGFYKLYHDIKLVQGTRNYQLVDKFYKFSSELLLRECCRISQTYQIRTKTNFKINNVLPQTD-----IENEAPRLGFVGAPTLPPTEMMTRFLHPNWYALPTTVWLKYGNYNSWAPSFNENGTVVDSTTRGLIWLERWTPSNYIGDDEIENFRN---GTPDKLVSDSLLKLKRLKVKRILKEVILA--------------------------------------------------- | |||||||||||||
8 | 6kw5A | 0.16 | 0.14 | 0.89 | 0.57 | FFAS-3D | FEKNPDKIYESYCKFIKNRTTINKRFELVDKFYKFSSELLLREISKSNLDKRPELPNTNFKINNVLPQTDIENEAP----RLGFVGANTLPPTEMMTRFLHPNWYALPTTVWLKYGNYNSWAPSFNENGTVVDSTTRGLIWLERITPSNYIGDDEIENFRNGTPD---KLVSDSLLKL------KRLRKERILNKVLKPTTEERELYFKVK------------RILKEVILAKKVSKVPINNV- | |||||||||||||
9 | 6w5cA | 0.09 | 0.09 | 0.95 | 0.69 | SPARKS-K | LLKKAPPITDEDKQKADPEMLRLALEEKRLNKVKSKKEVIANKIVAKALELRDKY--GPVLIKGENISDTTKKKSSTNSWLARGVANKVKEMVMMHQGLEFVEVNPNFTSHFVHKNPENTFRARYSRCTPELTEKNRKEILSFLSDKPSKRYNEGAMAFLATYGVSLEKFKQIMANILHQRSEDQLLFPSRGGMTYKLDADAT-------SVN--WNGKQFWVCNADLVAAYNVGLVDIQKDFK | |||||||||||||
10 | 6smwA | 0.10 | 0.06 | 0.58 | 0.63 | CNFpred | ----------------------KAYQDQVLRNCSKFAETLLAK----GYDLVSG--GTDNHLVLVNLK--------NKGIDGSRVEKVLEHIAANKNTVPGDVSAMVPGGIRMGTPALTS---------RGFIEEDFAKVAEYFDL-----AVKIALKIKAESQGTKLKDFVATMQSNE--KLQSEMSKLREM--------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |