Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | GVNIERQRVASPFLCEAQESLALYKVIDPNTWGKMIGRVNGVNFTGIYGGTHAMGWQSVRIPKGYTWKSFMQFLLSTLPEETRRNYLKKLTVSIEFWRTKGGCLSENTIKKLQDAGIPIEVVNYTNYKTNKKPVRMDYLDDIDIAEFREIPTYKRMCICILKNDHACKYMGFALTKEEI |
1 | 1c7gA | 0.09 | 0.07 | 0.84 | 0.64 | DisCoVER | | HIVPTHQGAEAVT--KIFYDATRCVENAYDIVHEMFSYADGC--TM-SGKKGGFLCGGLYIEHRVKQVRYLGDKLRGG------------HAVFLDARDQFPAQS--LAASIYETGVRSMERGIVSARPKLETVRLTIPRRVAGIKEIRGL---TFVYEPKQLRFFTARFDF------- |
2 | 1ax4A | 0.05 | 0.04 | 0.77 | 0.83 | DEthreader | | LKAFYIG-SNFVTWKGDF-I-------IVAIVS-TV-CNSAGGQPVNFIKYIKVIFYDALTM------S-AKDPLLGTEEEYLHYRIGQVKYLGDRLREAIVDCLVPIQFPQAVINALYLESG-----------VRAVEIGFLLADMEFMRL--TI-A-RRVY-T-NDHMDYI------ |
3 | 4j5uA | 0.09 | 0.09 | 1.00 | 0.69 | CEthreader | | TYLIDYDEIERLADLHKPKLLIAGFNIDFAKFREIVDKVGAYFMADIAHIAGLVATGEHPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGITGKLAANSLDRAGITCNKNAIPFDETITSGIRLGTPACTTRGFKEKFVLVGHMVADILDGLKNNEDNSALEQQVLN |
4 | 5v6pA | 0.06 | 0.05 | 0.84 | 0.55 | EigenThreader | | --LAIF----VVVTYLLTFYCVYSATKTSLQVTLKLNEG-FNLMVLSIFILLNSTLLWQLLTKLLFLKVFHWILKDRLEALLQSRFSFNLVLLAVVDYQIITRC---ISSIYTNQKSDIE------------STSLY------LIQVMEFTMLLIDLLNLFLQTCLNFWEFYRSQQSGK |
5 | 2pffB | 0.11 | 0.10 | 0.95 | 0.43 | HHpred | | GFTPGELRSYLKGATHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPTSLPP----SILEDSLISNLTQEQVQDYVNKTNSHLPAGKQVEISLVSGPPQSLYGLNLTLRKAKAPSGLDFSRKLKFSLPVASPFHSHLLVPASDLINKDLVKNNVSFN---AKDIQI-- |
6 | 1dvpA | 0.17 | 0.12 | 0.68 | 0.40 | MRFsearch | | ----IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVF--------------------------TKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFYQAIKDTMTILKAKGHTFPELR-------------------EMFTADTAPNWADGRVCHRCRKHHCRNCG-------- |
7 | 6h1jA2 | 0.09 | 0.05 | 0.54 | 0.52 | FFAS-3D | | ---------STG--NQYFATINIYKAINQEKRHQLAGKY--TTRLLRHGQKKNFANSKMKYEDKIEWLNNFSKTINKVPRDSDKYVTQIFNLKLEAIRQN----DLLAVMIADK----------------------------------------------------------------- |
8 | 1q88B | 0.10 | 0.09 | 0.91 | 0.82 | SPARKS-K | | ----------MCIGNSTPNEQETFRAKVDEIWFRLTFLIEKAAEYFIEVISAIMAPQE---EQTKSKADLYKFLAMFGP---YETIMLKIASLLLISNNKGHTFDPQAEKNANNQRDSISGWFDQNEPPTGIRKIWNKP-LIEAENGEKYDSWDKYFEMKPIETYLTAYPTFAPMHHHH |
9 | 1dvpA | 0.20 | 0.09 | 0.46 | 0.51 | CNFpred | | ---------------SSCYSLLVLESIVKNCGAPVHEEVFTKE----------------------NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSKYQAIKDTMTILKAKGHTFP----------------------------------------------------------- |
10 | 5ek8A | 0.09 | 0.07 | 0.79 | 0.83 | DEthreader | | DEKALVLKIDSKFQAYASANVLTPIKAKHQIQADYPP-------------GMNGEEHYAKVVATYDWKD-WQP-RQPHKAKAANLYWQILTEYVDAFFAKHQAIAD-EWVEIRRENSQPSA------------DIDNLKQC---------CRHIIFHTTLWHTWGLLVNVPLRLLNRKI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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