>PF11899 (395 residues) KHTQFNDEYIYAFTWEDTRVDERLLKLGADDKVLAITSAGDNILSYLLQSPARVHAVDLN PTQNHLLELKAASYTALPYEDFWKIFGDGKHPHFRELLITKLSPHLSGRAFQYWLKNVHV FQNSSGYGLYDTGGSRHAIRVFRWIARIFGLQKAVKQLLEAKTLNEQREIWRRKIRPALL SKLVCNLVVSQESFLWAALGVPKNQLAMIEADHAESDLVKGPKPRAKNTRSHAIWHYMVN TLDPVAEETHIAADNPYYYVCMDGKFSPKCHPDYLSPKAHAKLSRPNALDGLRIHTDELE EVIARITPGTLTVAVVMDSMDWFDTGSRAAAQQITKLNRALQMGGRVLLRSSALTPWYIK EFEAHGFTPKRHGARTDGACIDRVNMYASCWICTK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KHTQFNDEYIYAFTWEDTRVDERLLKLGADDKVLAITSAGDNILSYLLQSPARVHAVDLNPTQNHLLELKAASYTALPYEDFWKIFGDGKHPHFRELLITKLSPHLSGRAFQYWLKNVHVFQNSSGYGLYDTGGSRHAIRVFRWIARIFGLQKAVKQLLEAKTLNEQREIWRRKIRPALLSKLVCNLVVSQESFLWAALGVPKNQLAMIEADHAESDLVKGPKPRAKNTRSHAIWHYMVNTLDPVAEETHIAADNPYYYVCMDGKFSPKCHPDYLSPKAHAKLSRPNALDGLRIHTDELEEVIARITPGTLTVAVVMDSMDWFDTGSRAAAQQITKLNRALQMGGRVLLRSSALTPWYIKEFEAHGFTPKRHGARTDGACIDRVNMYASCWICTK | |||||||||||||||||||
1 | 5yf0A | 0.10 | 0.05 | 0.51 | 0.48 | DisCoVER | KIRKCIKTLKQFVRDGERACYQPIENFPSKVNILVPAGLGRLAWEIAMLGYA-CQGNEWSFFMLFSSNFVL--N---RC---S--EIN-----------------------------------------KYKLYP------------------------------------------------------------WIHQDQIR----------------------------------------------------PI--F-----F---PDVDPH------SL--PPGS-NFSMTAGDFQEIY--SECNTWDCIATCFFIDTAH--N--VIDYIDTIWKILKPGGIWINLGPLLYSIEINVVLQYGFKVEVEKES--VL-STYTVNECVLFVVR- | |||||||||||||
2 | 6uloA | 0.07 | 0.04 | 0.61 | 0.83 | DEthreader | -PTKWDVGDTVSNEDRL-DLLIPHVQNLG-NVYVGVG-SEQNLTIAAWAKSDFIYLMDFTQIVVHANTITILFLQKSKKEDFIRLWG-K-E--GEKEALELIQVSFSD--PEVYKKVYKQAS----PFIRK----R------------------------------------------------------------------------------------------------------------------------H-KTN---LMLSKKYKMFQDDEQYSYIRKLAIEGKILPIRGNLGITLTGINKRKVGIIYFSNAEEY-F--AY-PQEFKNSILNLPVSESLVVRTISVRKF--NFQKWLSSSVMEGGTVDK--KN-G-----ITVVDKEP | |||||||||||||
3 | 6wlfA | 0.08 | 0.08 | 0.98 | 0.61 | CEthreader | INTMMLNNNADQLEPFDRADIIQDLPDFTGMNVVDVGAGIGRFTTTFAQRAKHVVSSDFIDSFIEKNKERNITYQVSDALGLNWLLMYLNEQECVRFLMKTMEWCTEPSTGKSKTGSMHSDKKANPTHYRYSSVYLQLLKELRWTDARGMQWRFNVLWAKSVPTYVERVLNWRQVHWLCVKVPAQDGGISNEKALISAMGRWKIIQDHTEYLLNGKTSWATDVINNVISKVDFNLPLYVYSPRVVSPFVFVDSHNIAAMTGLSVWAVETNPLFYRHMLNRCVEAKDRRVQYGWNADLQSSINDWGLKKARFGGVIATELFMANS------DTSLMALKEILDDNANIFTIEPALSIEDFKENVVVPENMEMIAITDVSAYVVCPCWLLVHARLL- | |||||||||||||
4 | 2g1pB | 0.07 | 0.04 | 0.61 | 0.67 | EigenThreader | ---KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVF---LNTDFSRYILADINSDLISLYN----IVKMRTDEYVQAARELFVPE------------TNCAEVYYQFRE--EFNKSQDPFRRAVLFLYLNRYG----------------------------------------------------------------------------YNGLCRYNLRGEFNVPFG-------------------------------RYKKPYF---PEAELYHFA--EKAQNAFFYCESYADSMA--RADDSSVVYCDPPYATNSFTLEQQAHLAEIAEGLVERHIPVLISNHDT-MLTREWY---QRAKLHVV-------------KVDELLALY | |||||||||||||
5 | 3fpjB | 0.13 | 0.07 | 0.56 | 0.25 | MRFsearch | -------------------------------------------------------------------------------YIYWDK---------IKRIASRLEGM---------------------NYHFDEMDTSGVMPLLDEIEEIAHDFESAKHILDDAEMNHALSLIRKFYLGMKLQMEKAQEVIESPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIRVNVVEIEPDIAELSRKVIEGL--------------------------------------GVDGVNVITGDETVID----GLEFDVLMVAAL-------AEPKRRVFRNIHRYVDTETRIIYRTYT----PVSDDDITGFRRAGVVL-----------VNNTSVLVFK | |||||||||||||
6 | 6d6yA | 0.10 | 0.09 | 0.93 | 0.71 | FFAS-3D | KYQRYANDITFNQPVNEPFFQVLLKQTPTAHLLLEY--------------QGELVAATKNLAKDLLEFVEQWGVVKPGNKKLIEKITLHELATLELCNLMAPEYELEAFAARWLLRQESELVSQLNIS----PRYQRLLGALLQILHKRGILARCKTFALENISSEVSAFYDYFSEKYPAHLSWLTVVKRCLEKYPLILGEVDVNEVVFTDGDMELFAGLFLGHRVADYFNELLADGVCWEVEQRLLEEKRAQTGGVTGILLEKLASHAEQIEFISSVFTRYGESKKQFPWVKYQTFDIEKSLQGIKSESFDVVIANNVLHNTKL----IHQTLNNSNSLLNTGGLLALLEFTQPILWQKVLSDCGFDEIIPLGMHALSKARE-----SVIFARK | |||||||||||||
7 | 5mptA | 0.08 | 0.06 | 0.70 | 0.65 | SPARKS-K | ------------------------------------------------------------------------------------LGGSILPKSAILDAFRIAKEA-----------TDDFILNGQLGTYYMPRSTELCVAHIVNAFEQLPYLPKHERFMNLKSVETMLEELLHDEPLHAAEHKLTSLTGSKFADCITLIFGSPEGREIVTDVYAK------------SPINAVWIQQAEFFLEQLVKREPLAGTGGTTVKMLPLLERLGVPVEYLSSSLIAAARKRKKYPFMKFKVVNIE---SPPDVHSQHIILATNCVHATR----NLEISTRNIHRILRPDGFLLLLEMTEQVPWKKILTSVGYGH--VDWTEGTRPEANIQ---RLIIALA | |||||||||||||
8 | 4ag5A | 0.09 | 0.07 | 0.73 | 0.78 | CNFpred | -----------------KMLLLREYMQ--GSRVIIIDPE-REYKEMCRK--LGGVWINCTGGEGKINPLQVRLR---FQSPLALHIQ------TLRTFFSLYLRDLTDTEKAALEDALVEVYKE-DTDPR-WPTVKELYEYCVKKAEE-RLSVLLKRAAEG----ADSYLWAGPTAVEADSDFIVFDVH-AEDQVKRAQ----------------------------------YFNVLSFAWNILERDRR---RTVLVVDEA---------WMLVDPQTPQAIA-------------FLRDTSKRIRKYNGSLIVISQNVIDFLA--PEVQRYGQALLDN--PTYKLLLAQG---EKDLEAITTLNLSEAEHDLLVNAKRGEGLFVAGTQRIHIK | |||||||||||||
9 | 6uloA | 0.07 | 0.04 | 0.60 | 0.83 | DEthreader | --TKWDVGDTTVSNEDRLDLLIPHVQNLG-NVYVGV-G-SEQNLTIAAWKSDFIYLMDFTQIVVHANTITILFLQKSKKEDFIRLW--GKE--GEKEALELIQVS-FSD-PEVYKKVYKQA------SPFIR---K-----------------------------------------------------------------------------------------------------------------------RH-KT---NLMLSKKYKMFQTDDQYSYIRKLAIEGKILPIRGNLGITLTGGNKRKVGIIYFSNAEEYF---AYP-QEFKNSILNLPVSESLVVRTISVRFH--FKWLSSGKSVMGGT-VDKKNG---------ITVVDKE | |||||||||||||
10 | 2qenA | 0.14 | 0.11 | 0.78 | 0.49 | MUSTER | RPKTRREDIF--------EEESRKLELENYPLTLLLGIRR-SLLRAFLNE-RPGILID--------------------CRELYAERGHITREELIKELQSTISP------FQKFQSKFKISLNLKFLTLPRKLSLREVFRELNDLGEELGE--EAQYLRFYGSRGG-----------KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEKPFDKDTSVEFLKRGFREV--NLDVPENEIEEAVELLDGI-----PGWL-VVFGVEYLRNGDFGRA---MKRTLEVAKGLIMGEL-------------EELRRRSPRYVDILRAIALG-------YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNW-----IVEE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |