>PF11885 (539 residues) CFDRFGRLGPYGLGYSVRKGGIGAGLEGDRDGAERVWEEHPPVDFRKVDWAAAQSRCLDV NRHRFQDLPEPRANHFLSMPVGTLLATNETSPKLQDRQELSRNGTERLQRTAVVIRTWHD FRFTSEDILYLRSLISELSLMSGGEYVVHILVHVKDENLQIWSDDETYDRVLKDSLPEEF RGLGTLWSERQMSLMYPGLEETMTRGLPIHGVYRSTYMPMQYFAHQHPEYDYYWNWEMDA RYTGHWYHLFDKVVDWAKEQPRKGLWERNARFYVPSVHGSWEDFRQMVRVQTEIGTNSPN NLWSGANGPTPGDKNPHKQQGDKPIWGPERPDERDMFEVEGEGIPPTTVDKDRYEWGVGE DADLIVFNPLYDPEGTTWLLRDDVTGYNRENGMPPRRTAIITASRLSRKLLHTMHRETTL KRHSMFSEMWPATTALHHGFKAVYVPHSVYVDRRWPTRYLESVFNAGRNGASGGARTSIF GDREHNFRGTTWFYSAGFSPNLWRRWLGYKVDNDGGEQAEVAGEGRMCLPPMLLHPVKE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | CFDRFGRLGPYGLGYSVRKGGIGAGLEGDRDGAERVWEEHPPVDFRKVDWAAAQSRCLDVNRHRFQDLPEPRANHFLSMPVGTLLATNETSPKLQDRQELSRNGTERLQRTAVVIRTWHDFRFTSEDILYLRSLISELSLMSGGEYVVHILVHVKDENLQIWSDDETYDRVLKDSLPEEFRGLGTLWSERQMSLMYPGLEETMTRGLPIHGVYRSTYMPMQYFAHQHPEYDYYWNWEMDARYTGHWYHLFDKVVDWAKEQPRKGLWERNARFYVPSVHGSWEDFRQMVRVQTEIGTNSPNNLWSGANGPTPGDKNPHKQQGDKPIWGPERPDERDMFEVEGEGIPPTTVDKDRYEWGVGEDADLIVFNPLYDPEGTTWLLRDDVTGYNRENGMPPRRTAIITASRLSRKLLHTMHRETTLKRHSMFSEMWPATTALHHGFKAVYVPHSVYVDRRWPTRYLESVFNAGRNGASGGARTSIFGDREHNFRGTTWFYSAGFSPNLWRRWLGYKVDNDGGEQAEVAGEGRMCLPPMLLHPVKE | |||||||||||||||||||
1 | 4upcA | 0.08 | 0.04 | 0.55 | 0.67 | DisCoVER | --IPLNKTAPCV------------------------------C-Q----SS--I--S----------------------------------------------------GDTGVIHVVEVLT---------GPNP-----------PYMVLLESK-----HF-TRDLMEKLK-GRTSRIA--AVSLTKP------------------SPASGFS-----PNGLAYDFSFPIFLGSCAMQLFSHMVCDPL-------SDYNVWVAATRL-DSRSNVAPGAES--AVASFV-TQ----------LAAAEALQKAPDVTTLPRNVMFVFFQG-------ETFD--YIGSS--------RMVPV-SQKNESKSGAGRPNQSQPL-----------PPRARNIGVVL-----------------------------A--DHSGAFDTAENINWLSP--------EE--DLALADVATVLGRALYEVQADPIPLQHYIAVVTGTVVNLCVRSTARLARAWSSTEYS---TWTESRWKDIRARIF- | |||||||||||||
2 | 6rc9A1 | 0.04 | 0.03 | 0.62 | 0.67 | DEthreader | ------------GLGLPQQRTE---------SGTGAMFGLKLFRLLQTTFFNRH-E----NGH--LSIGYALFSGM--------------NRWFE-----VGALAGTITMGDTTVPRLLYDELELNLVAQGLREDLQLF---------NRPDLPIGAWSSSS------------------------HNAPYYFHNNPDW--------------YSGMWAWQ---------WSNKLFVNEN-A---YQPNSLFAFSTGFNLVGSVLDQLDVWYRYGNNHRDTALPTFSNVG--VQATLNLQLWTRNDKA-SS-QSDENH-------TADWPNALSFTN--------------------K-NNAQRAQLFRGLLGS-PVLVNRS-----FQATDQKW--------------------------QTKLNLPAYGEVNGLLN-----A--LVETYFGNTRAGGSGSNTTS------S---PGIG----ITPGLAWTPQDGPNALAFQVS-----KVTQSDK-LDDDLKNLLDPN--------- | |||||||||||||
3 | 1lshA | 0.08 | 0.08 | 1.00 | 0.67 | CEthreader | FPSSAITKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNRSLSRSSNPEFRDVAAACSVAIKMLGSKLDRLGCRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEKSVPEERPLASGYVKVHGQEVVFAELDKKMQEQIGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADMKLADLLATNIELRVAATTSMSQHAVGMQTHYKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVVVLSTM | |||||||||||||
4 | 5uot0 | 0.07 | 0.06 | 0.85 | 0.67 | EigenThreader | DQSSGKSSVLEALSGV---ALPRGSGIVTRCPLVLKLKQPCEADPGQVEKEIHKAQNVMA------GNGRGISHELLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATT--------EALSMAHEVDPEGDRTIGILTK---PDLMDRGTEKSVMNVVRNLTYPLKKGYMIVKCKEITFFQTHPYFRVLLEEGSATV-----PRLAERLTTELIMHI--------------QKSLPLLEGQIRESHQKATEELRRCGADI--PSQEADKMFFLIEKIKMFNQDIEKLVEGEEVVRENETRDFKNWVGILATNTQKVKNIIHEEVEKYEKQYRG--------------------KELLGFVNYKTFEIIVHQYIQQLVEPALSMLQKAMEIIQQAFINVAKKHFG---EFFNLNQTVQSTIEDIKVKHTAKAERMEQMVFCQDQIYSVVLKKVREEIFNSFTEIGIHLNAYFLETSKRLANQIPFIIQYFMRIYRL---TQARHALCQFSS-------------- | |||||||||||||
5 | 5a07A | 0.14 | 0.09 | 0.64 | 0.38 | HHpred | ---------------------------------------EPLYEKDTFD----PNEVLAENKQLYEEFLLQEI----------S------EPKV-DNLVRSGDPLAGKAKGTILSLVRN------SDLEDIISSIQEEEYNKNFGYPYTFLND---EE---FT-DEFKDGIKSIPIGPDNWNMPDSIDRERYDQEMDKMSKEIQYAE--VESYHNMCYSKEFYHHLLSKYKYVWRLEPNVNFYCKIYDVFQFMNK----NDKIYGFVLNLYDSPQTIETLWTSTMDFVEEHPNY--LNVNG-----------------------AF-----AWL---K------------DNS---QN----------PKNYDYTQGYSTCHFWTNFEIV---------DLDFLRPYEKYMQYLEEK----G-GFYYERWVRSLALFHWFRDIGYHHTPYTNCPTCPA---------DSDRCNGN--CVP---G---KFTPWSLDNQNCQATWIRHSMSEEE--------------------------- | |||||||||||||
6 | 2vtbA1 | 0.12 | 0.07 | 0.54 | 0.50 | MRFsearch | ---------------------------------------------------EEIDSVAIKTFERYALPSSSSVKR------------------------------KGKGVTILWFRND-------LRVLDNDALYKAWSS-----SDTILPVYCLDPRLFFPKTGALRGGFLMECLRKNLMKLLIRSGKP--------------------------EEILPSLAKDFGARTVFAHKET----CSEEVDVERLVNQGLKRVGNSTKLELILPFDVFDLPDVYTQFRKSVEAKCS-----------------------IRSSTRIPLSLGPTPSVDDWGDVPTLEKLEPQEVTRGMRFVGGESAGVGRVFEY-----------DLLKVYKETRDYSTKFSPWLAFGCISRFIYEEVQRYEKERVANNSTYWVL-------------------------------------------------------------------FELIWRDYFRFLSIK-------------------------- | |||||||||||||
7 | 5xwpA1 | 0.13 | 0.12 | 0.94 | 0.49 | FFAS-3D | ---KVTKVGGISHKKYTSEGRLVKSESEENRTDERLSALLNRLDYSSTETKENQKR-IGKLKKFFSNKVYLKDNTLSLKNGKKENIDREYSETDVRDKKN----------FAVLKKIYLNENVNSEELEVFRNDIKKKSLKNKANYQ-----KINENNIEKVAKRDAYVSNVKEALVLEIENLTKLEKYKIREFYHEIIGRKNDKENFAKIIYEEILKKSQVFYKYYLDYAFCHFVEIESQLLKNYNKLLNKLDTYVRN-------CGKYNYYLQDGEIATSDFIARNRQNEAFETENENDITGRRGKTVKNNKGEEKYVSGEKIYNENKKNEKENLKFYSYDFNDNKNEIEDFFANIDEAISSIRHGIVHFNLELE---GKDIFAFKNIAPSTERLNFYLILKLLNHKELTNLKGSLEKYQSANKEEAFSDQLELINLLN--LDNNRVTEDFELEADEIGKFLDFNGNKVKDNDTNKIYFDGENIIKHRAFYNIKKYGLNLLEKIAGYKISISNKKNEIEKNHKQENLHRKYARPRKD | |||||||||||||
8 | 5nd1B | 0.12 | 0.11 | 0.86 | 0.72 | SPARKS-K | VGNTVAADVQTSVHDKPTKGSDGTGIHEATG---LPIDKRGEVPTVQLER---TAESIAKMMDLLRSEK------FTAAAADAKLMLQQEFQNIVACAKNAPQMTVNAGRTAIIAGDTADIEY------------------SGKRIEGQCVVALEGSTSSTQDNSDSA--KLFALAVSQVWGVGIVAQEQTFRARVER-----DSGFQHHAALTTVVTTIVGWLMHVGDSA----------AKRSRDGWLDH--------QTDFAVKGMLTPHIAS-GMDWAGVQTYSASAMETTTDRVRADYAGRMVVHSTL---------RKQTLRSRGTGDTTETENSGRYLLALPKCDAGTWGKPKGAGHANLTAVMSEAGVGYITGNGTRATPHADTVFGREELVYLLGFALRHMADAVIRNVLAQVASLFRPAACSA----HEWMNVHGALMPKVSRPMNEPAFREVWN-----VANSSSDLQMIDREHFLRGITDGDTTRLQKDLYHHLFQYATTADGVQAWGLGSSGPHCAYYFGLADAAD | |||||||||||||
9 | 3i45A | 0.08 | 0.05 | 0.59 | 1.00 | CNFpred | -----------------------------------------------------------------------------------------------------------LEAIRIGEINSYIPAFTLPYRNGWQLAVEQINAAGGGGRPLEVISRDDG------GDPGKAVTAAQELLTHGVHALAGTFLSHVGLAVSDFA----------KVLFMASEPLTDALTWEK-GNRYTYRLRPSTYMQ--AAMLAAEAAKLP--------ITRWATIAPNYEYSAVARFKELLLAARP-------------------------------------------------------------------EVTFVAEQWPA---LYKLDAGPTVQALQQA----PEGLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGEPEYLN-GWIVTGYPWYDID--APHRAFVEAYRAR------WKEDPFVGSLVGYNTLTAMAVAF-TESETLVETLKDMAFSTPMG-PLSFRASDHQSTMGAWVGRTAL | |||||||||||||
10 | 7bwmA2 | 0.05 | 0.03 | 0.63 | 0.67 | DEthreader | -RGLGLPKADFAPWRPWLATEQI-KDLKWS-----EFDGGQTVADNEKTGFDV---------------------TKQGFQKEADDK------------------SGMNNNYGDVPRLLYDELENLNLVAQGQGLLRED---------PDLPIAWSSSSSSS-------------------------HNAPYYF-QDRPINVVDA----PYRYSGMWWQVYNWSN---PLSADFVNE---------AYQPNSLFA-STGFNLVGSVLDQVLDYVPWIGNGYRY-GN-NH-RGV-DD----ITAP------------------NIGV--KANV-QA-TL------NL-Q-L------------------TGAGWRND--QDEHTKFTSATGMDTSAG----------------------ATNYTNLPPNLTPTADWPNALTKNNQRLIPVLVRSGSD---QATDQKW------SYTDLHSDQTKLNLPPVIGFKI-SKATLITP--S--STTTA-T-RN--A--LPEHPNALAFQVSVVPK | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |