>PF11881 (251 residues) KQVDTNAKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIVMDNLGPEQERDTGQSPQ KSLQRTLSDESLCSGRREPSFASPASLEPGLPSDVLFTSTCTFPSSTLPARRQHQHAHPP SGAPSTTPATGNGFPEKKSAISASELSLADGRDRPLRRLDPGMMPLPDTAAGLEWSSLVN AAKAYEVQRAVSLFSLNDPALSPEIPPAHSPVHSHLSLERGPQTPRATPTMSEESPLDLT GKVYQLEVMLK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KQVDTNAKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIVMDNLGPEQERDTGQSPQKSLQRTLSDESLCSGRREPSFASPASLEPGLPSDVLFTSTCTFPSSTLPARRQHQHAHPPSGAPSTTPATGNGFPEKKSAISASELSLADGRDRPLRRLDPGMMPLPDTAAGLEWSSLVNAAKAYEVQRAVSLFSLNDPALSPEIPPAHSPVHSHLSLERGPQTPRATPTMSEESPLDLTGKVYQLEVMLK | |||||||||||||||||||
1 | 5zqzB | 0.04 | 0.03 | 0.71 | 0.77 | DisCoVER | GVRTPHDLAALIFGTVIQEVKTSNVARDKTPAHTVTMAC-ISAGGVELMVSRLEQDEYASNSSFVSQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFAENYMGRKTKVGLPPEKFNNWGGSLSGHTGLVAANRLRKEGGQYGLVAACAA----------GG--QG--H---A-------------------MIV------------------------E---AYP-------- | |||||||||||||
2 | 4x9eA | 0.05 | 0.04 | 0.76 | 0.67 | DEthreader | ----EHEILR--ESDRGRIINSPIR-----RLTHSMEVQQVGRYAK------EAYGLLPFSIVMSCLMHDIGNPPFGHFGEA--NDRQDLCHFEGNAQGIR-L------------------------------VHTLMRMLQVGILYTRPWRGETPHLMPGYYILRLLASRFPLTWIMEAADDISYCVADLE-DAVEKRIFTEQLYHHFVVNAWESR-STEDQFMYLRVNTLKLYARFIFNHA--E----- | |||||||||||||
3 | 5nywA | 0.08 | 0.06 | 0.76 | 0.52 | CEthreader | -----------------------------------------------------------TYCVAMRLSSGLFASDSRTNTFRKLHLFQQPGERTLVVQSAGNLATTQSIVSLLQRRCLDPEQTNLMNVASMYEAATLNCNLLLGGLFHIYPQGNFIEATQDTPYFQIVLSYDTPLDQAMQCALISMDSTLRSNLSVGLPLDVMIYPLDSFSTEQQYRITEDHPYFMMIRKGWGEGLVSIFAQLPGLKLG-- | |||||||||||||
4 | 6rkoA | 0.08 | 0.07 | 0.95 | 0.62 | EigenThreader | LAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAIRNGMKAYSLLEQLRSVMKKDLGYGLLLKRYTPNVADATIALSFWSVIRNRIGEKKWLLRAALYGI-----PLPWIAVEAGWFVAEYG-----RQPWAIGEVLAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARL--GPSSL | |||||||||||||
5 | 2gqbA | 0.25 | 0.07 | 0.27 | 0.29 | HHpred | --------------DVAPILDKAAKGEKEWRTSIV-DLMKALDIDSSLS---------ARKE----LAKELGYSGDMNDSA-SMNILHKKLPPEIK----------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3ppcA | 0.19 | 0.04 | 0.23 | 0.55 | MRFsearch | ---------------IGLGLFDIHSPRIPSKQEFVSRIEEILKV----------------------------------------------YPASKFWVNP-----------------------------------------------------------------------KESLTNMVEAAKEFRAKY-------------------------------------------------------------- | |||||||||||||
7 | 2akhY | 0.13 | 0.12 | 0.87 | 0.43 | FFAS-3D | SFISIFALGIM--PYISASIAEIKKEGESGRRKISQSIGIATGLPNMPGMQGLVINPGFAFYLGEQITERGIGNG---ISIIIFAGIVAGLPPAI---------AHTIEQARQGDLHFLVERGQRRIVVNYAKRQQGRRVYAAQSTHL------PLKVNMAGVIPA----------IFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQTALVFNPRETADNLKKSPGEQTAKYIDKVMTRLTLV-- | |||||||||||||
8 | 4btgA3 | 0.12 | 0.12 | 0.99 | 1.14 | SPARKS-K | LQLPLQFTRTFSASMTSERVGRTATYPFDANAVVSSVLTILGRLWSPSTPKELDPSARLRNTIDQLRSNLALFIGRAEVIFSDSPFKLRPINETTYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKL-ANNSNQRFLDVEPGISDGNTRGTVNSNGAEMTFPSVALDRDPMVAIAALRTGSMFNYYAAVMHYAVAHNPEVAAEQGSLYLVWNVRTELRIPVGYNAIEGGSI--RTPEPLEAIAYNK | |||||||||||||
9 | 4cruA | 0.10 | 0.03 | 0.29 | 0.45 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRMRIAAHHMMRNLTAGMA---MITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELACCFI | |||||||||||||
10 | 1vw1A | 0.05 | 0.04 | 0.76 | 0.67 | DEthreader | ------------CTDISHSSFNF-WSTHDLHAQQAQKDNRLYEAILKANPRASQYVATVSSSPAAYLTELYREARNLHASDS-YYLDTRPDLKSMALSNIELS-S-A--NVR-VIQ-LIAGLMTQWNAQQLVLVLTL--QANTL-AF--------DE-RS-Y-LLIDNVSIKTAEIASIQLYVNRALNENANSYYLGQKQYTSVSGP-----RKLGY-------------------DRADITTQR-ANT-- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |