>PF11876 (198 residues) TSNAESDSYGAMSCVKIMLPWQLLEDEDGEQRFKDWACYLCENLDVEHGYAGLACNLPYD YHQFQPYEFQMAQRYSGLMVDSFALIDGGNLSEHIKGVNWLTLLGPRYIEQLGGMAALKQ QLQLPDVSVQETDNGRLMVQAGVLPDVGAQEDGHPPAYVAVNRVLKSIRVPNPDQLHSCM DDAEGFTKANTLAWYARF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TSNAESDSYGAMSCVKIMLPWQLLEDEDGEQRFKDWACYLCENLDVEHGYAGLACNLPYDYHQFQPYEFQMAQRYSGLMVDSFALIDGGNLSEHIKGVNWLTLLGPRYIEQLGGMAALKQQLQLPDVSVQETDNGRLMVQAGVLPDVGAQEDGHPPAYVAVNRVLKSIRVPNPDQLHSCMDDAEGFTKANTLAWYARF | |||||||||||||||||||
1 | 3ekiA1 | 0.08 | 0.05 | 0.60 | 0.65 | DisCoVER | --------------------Q--GQ----W-------------DKSITFGVSEAWLNKKKGGEKVNKEV---------INTFLENFKEFLKVDFKVTPIQDLDFGI--N----ASGKLVEFLNPGIITPALETTDVGVFRKSVNQLE--------------------QNLITFINLQDTYGPLLGY---NGY-KKID- | |||||||||||||
2 | 4rhoA | 0.09 | 0.06 | 0.65 | 0.83 | DEthreader | SLEHHVSDEKLPDRFSTRLGV--PDCYAKSQDLADVVTTIVAAFNPLVVEASP-E------------G--YFD-KQVFD---------------DKPGVGWLYLP---K----VIT--QQQVPE-ARALIPVSATGTIIVSVTAPFSVDN-PEHVAIANRIEIRLVDLPAYVD------------------------- | |||||||||||||
3 | 4rhoA2 | 0.10 | 0.06 | 0.57 | 0.79 | CEthreader | ------------------------DCYAKSQDLADVVTTIVAAFNPLVVEAS-------------------PEGYFDKQVFDD------------KPGVGWLYLPKVIT---------QQQVPEARALIPVSAQTGTIIVSVTDAPFSVDNPEHVAIANRIEIRLVDQDLLPAYVDI--------------------- | |||||||||||||
4 | 6jdpA | 0.12 | 0.08 | 0.70 | 0.70 | EigenThreader | RTRALWNGEEDPEASRLQLEDSLLQVFDAPASSFVAIFLAVLEIWPETTWGMLAPH---------AYFVHQR-----TFPD-------------RRSIGWIGFCPHPLR----AT------DFPAATELVDIP-GRGTLLLNGREPMDETRREHFERVGEADIKLMELGYLPPLRG---------------------- | |||||||||||||
5 | 6jdpA | 0.08 | 0.05 | 0.65 | 0.30 | HHpred | -----ASGRAVSSRLQLEDAGSLLVFDAPASSFVAIFLAVLEIWPETWGMLAP-----H--------AYFVQRTFP----------------DR-RSIGWIGFCPHPL---------RATDFP-AATELVDIPGRGTLLLNGRE--PMDE--TRREHFERVGEADIKL--MELGYLPPL------------------- | |||||||||||||
6 | 6jdpA | 0.09 | 0.06 | 0.59 | 0.53 | MRFsearch | -----------SSRLQLEDAGSLLQVFAPASSFVAIFLAVLEIWPTTWGMLAPHA-----------------------------YFVHQRTFPDRRSIGWIGFCPH----------PLRATDFPAATELVDIPGRGTLLLNGREP----MDETRREHFERVGEADIKLME---------------------------- | |||||||||||||
7 | 1tueD | 0.09 | 0.08 | 0.89 | 0.46 | FFAS-3D | ---SKIDEGGDWRPI-----VQFLRYQQEFITFLGALKSFLKGTPKKNCL----VFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTTKVAMLDDATTTCWTY--FDTYMRNALDGNPISIIQLKCPPILLTTNIHPAKDNRW-------PYLESRITVFEFPNAFPFDKNGNPVYEINDKNWKCFFERT | |||||||||||||
8 | 4h08A | 0.07 | 0.06 | 0.82 | 0.54 | SPARKS-K | IWIPGANKTDLPHVLLIGN-----------SITRGYYGKVEAALKEKAYVGRLSNSKSVGDPALIEELAVVLKNTFDVIHFNN-------------GLHGFDYTEEEYDKSFPKIKIIRKYA--PKAK---------LIWANTTPVRTGEGKEFAERLNVRNQIALKHINIDHPEYYA-GGDGTHPIDAGYSALANQV | |||||||||||||
9 | 4ay7A | 0.12 | 0.09 | 0.72 | 0.74 | CNFpred | -----------ADVIAIADPVA-SPDLMSPDSFRQFLKSRLQKFASS-VNSVTVLHICG---NVNPILSDMADCFEGLSVEEKIGSAK-KGKEVIRARLVGNVSSPFTLLPG-PVDKIKAEAK------EALEGGIDVLAPGCGIAPMT----PLENVKALVAARDEFYA---------------------------- | |||||||||||||
10 | 4a01A | 0.07 | 0.06 | 0.82 | 0.83 | DEthreader | EGFSALTAISTFLLVTVFLKIAAAFRSAVGFLLAANGLLVLYIAIITYGGS--ALFG----G-GGIYTKAGD-GDIAGMG----------------SDLFSYAESSCAALVVASPLLCVAVGLWGLI---------LLSTITGAIDAGNT-AAIGGFAIGSAALVSLLF-GLPWFMT-DASIKEMIPPLPTSGPSLNI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |