>PF11868 (190 residues) VTKLRQPKLRDRLAVRHGRYIQRDADDKKTFRFVRDELGLLVDFMAELFKQEGHKLIGIR GMPRVGKTESVVAASVCANKRWLFVSSTLIKQTVRSQLIEDEYNENNIFIIDAIVSTRRA NERHWQLIRELMRLPATKVVEHPDIFVRHTEYTLDDFDYIIELRNEHDEEITYDLVDQQS LFSEDGFGNF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VTKLRQPKLRDRLAVRHGRYIQRDADDKKTFRFVRDELGLLVDFMAELFKQEGHKLIGIRGMPRVGKTESVVAASVCANKRWLFVSSTLIKQTVRSQLIEDEYNENNIFIIDAIVSTRRANERHWQLIRELMRLPATKVVEHPDIFVRHTEYTLDDFDYIIELRNEHDEEITYDLVDQQSLFSEDGFGNF | |||||||||||||||||||
1 | 3bosB1 | 0.14 | 0.09 | 0.64 | 0.62 | DisCoVER | AAGNL-IGA--------------------------------LKSAA--SGDG-VQAIYLWGPVKSGRTHLIHAACARANRRSFYIPLGIHASISTALLE--LEQ-FDLICIDDVDAVAG---LWEEAIFDLYNVRGSLIVSASASPAGFVLDLVSRHGLTYQLQ-------------------------- | |||||||||||||
2 | 1z6aA | 0.10 | 0.09 | 0.87 | 1.00 | DEthreader | KNPQALTTNVY-CN--L-TPQA--------KIVDHRSKMIRTMEIIEEALDEGDKIAIFTQ-FVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVFIVLSV-K----AGGF--GI--N-LT-SANRVIHFDRWWDQATDRRIGQNVIVHKLISVGTLEEIDLAFKIISSGSWITLLKV | |||||||||||||
3 | 2z4sA1 | 0.11 | 0.08 | 0.77 | 0.44 | CEthreader | -----------------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPG--RYNPLFIYGGVGLGKTHLLQSIGNYVVLRVMYITSEKFLNDLVDSMREKYRKKVDILLIDDVQFLIGVQTELFHTFNELHDSGKQIVICSDREPQSEFQVSRFQMGLVAKLEPP------------------------ | |||||||||||||
4 | 5l4gH | 0.12 | 0.12 | 0.96 | 0.62 | EigenThreader | LSDQVAPTDI-----EEGMRVGVDRNKYQIHIPLPPMMQVEQIEKLREVVEEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVGARMVRELFEMARTKCLIFFDEIDAIGGARFRTMLELINQLRGNIKVLMATNRP---DTLDPALMRDRKIEFSLPDRRKIATEKDFLEAVNKVIKSYAK | |||||||||||||
5 | 2dhrA | 0.22 | 0.19 | 0.87 | 0.56 | HHpred | ---------------------KVTFKDVAGAEEAKEELKEIVEFLKSRFHEMGARGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFAARVRDLFETAKRHAPCIVFIDEIDAVKRGNDEREQTLNQLLVFEKIVVMNRPDI-LDPALLRPGRFDRQIAIDA-PDVKGREQILRGKPLAETPGFVG- | |||||||||||||
6 | 2dhrA1 | 0.24 | 0.18 | 0.75 | 0.30 | MRFsearch | -------------------------------EEAKEELKEIVEFLKSRFHEMGPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFAARVRDLFETAKRHAPCIVFIDEIDAVGRGNDEREQTLNQLLVETAIVVMAATPALLR-----PGRFDRQIAIDAPDVEDVDLALLAKR----------- | |||||||||||||
7 | 5he8A | 0.13 | 0.09 | 0.70 | 0.52 | FFAS-3D | -----------------------------------DVAMAADDICTAITNGEQVKGLYLYGPFGTGKSGAIANQLKSKKVRSTIIYLPEFIRTLKGGFKDGRVREANILMLDDIGAEEVTPWVRDEVIGPLLVHELPTFFS--------SNFDYSELEHHLAMTRDGEEKTKAARI-------------- | |||||||||||||
8 | 3io5A1 | 0.14 | 0.11 | 0.78 | 0.60 | SPARKS-K | ------------------------------------VVRTKIPMMNIALSGEQSGLLILAGPSKSFKSNFGLTMVSSYDAVCLFYDLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKAKTMKSLFRIVTPYNIP------CIAINHTTGPMYSADTVFIIGKRYQFVLNVEKSRTEKSKFDGGIDPY | |||||||||||||
9 | 1md9A | 0.18 | 0.13 | 0.69 | 0.69 | CNFpred | --------LRDRAAKYGDRIAITC----GNTHWSYRELDTRADRLAAGFQKLGKDRVVVQLPN--KEFFEVIFALFRLGALPVFALPSHRSSEITYFCE----AEAAAYIIPDAYS----GFDYRSLARQVQSK----LPTLKNIIVAGE------AEEFLPLE-------------------------- | |||||||||||||
10 | 1z6aA | 0.08 | 0.07 | 0.84 | 1.00 | DEthreader | HGLDLGKTL-I-ICP---LSVLKNEESKNVYCNLVSGKMIRTMEIIEEALDEGDKIAIFTQFVD-MGKIIRNIIEKELNTEVPFLYGEL-SKKERDDIISKFQNPSVFIVLSV-KAG--G---F--GI-N-LTSANRVIHFDRWWDQATDRIGQRNVIVHKLIS-VG-TLEIDLKISS------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |