>PF11850 (422 residues) QQVRPLPGSLDRVPVFNSNSPEVVQTEGILLSTFPPSGKQTANAHLNFPFQGRFDIFAHH IAKATSPEDLRTLYLGVLLHNPSTQPVTVDVLQAASYLSQPDAPFIELPPQTENPLGTIF AGPGDRVMNDILRGRRQSVFPAQITIPPQQSQMLLNLPIPVQTLEPPINGRSTLMRLRSS GRVYAASLAMYAKSNADGSERAPTLTEWQQLLETGNLAGPRDRAPTPPEASGKVIYGRVA GVAQGSQWQAQLVDSPNVQHLSIPQRGQAFSYGLSTLTAGRQGTSQVQSAPLMVRYPDTA YQAHGNYGIEYNLSLPLYNNTTQPQTIGVSLQTPIKEDELTQGGLRFLIPPATQNFFRGT VRLRYSDDRGLPQTRYVHLVQKRGQAGEPLVLLNMPPGDRRLVQFDFLYPPDATPPQVLT IQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QQVRPLPGSLDRVPVFNSNSPEVVQTEGILLSTFPPSGKQTANAHLNFPFQGRFDIFAHHIAKATSPEDLRTLYLGVLLHNPSTQPVTVDVLQAASYLSQPDAPFIELPPQTENPLGTIFAGPGDRVMNDILRGRRQSVFPAQITIPPQQSQMLLNLPIPVQTLEPPINGRSTLMRLRSSGRVYAASLAMYAKSNADGSERAPTLTEWQQLLETGNLAGPRDRAPTPPEASGKVIYGRVAGVAQGSQWQAQLVDSPNVQHLSIPQRGQAFSYGLSTLTAGRQGTSQVQSAPLMVRYPDTAYQAHGNYGIEYNLSLPLYNNTTQPQTIGVSLQTPIKEDELTQGGLRFLIPPATQNFFRGTVRLRYSDDRGLPQTRYVHLVQKRGQAGEPLVLLNMPPGDRRLVQFDFLYPPDATPPQVLTIQ | |||||||||||||||||||
1 | 4xupA | 0.06 | 0.04 | 0.65 | 1.02 | EigenThreader | AAKAGDEEGTTQGWTARGGVQAYQGKQSLQTTGR-------TEAWN--------GPSLSLTDVVHK---NEVVEISGYVLVAGSAPADLKFTVERRDG---------------------------------------NGDNAAEQVTDQKVKLQGQYSYE-------QGSSLLLYLESTDAAYLLQIRLVKAAPENPGEAGQFE----------DGNIGNWR-------------------ARGTEKLEVVSG----------IGHNSNRSLKTSS---------------------------RSETYHGPLVEVLPYLQKGSTVHISFWAMYDEGP----------------ATQVINGSLEKEFNRDTANLMFASTTLNKG--QWKKIEADIVPAESTSGLRMYAETTETDTIPFYVDDV | |||||||||||||
2 | 4d94A | 0.12 | 0.09 | 0.73 | 1.31 | CNFpred | ------------LMRFMVTCTERM--TFFVYYVMS-----------------KGNIIDAGFMRP----KQPKYLLQLNATEKMIPRAKILIATVA---------------------RTVVYD------------------FADLDFQELRNNFDLSIDE--QEIKP---GRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDG-------NEFDIFH------SLGLFARTL-SWLWKNVSIGRSRKLIEVVPD--TTTSWYLTGFSIYGLGI-FTTVQPFYIVENLPYSIK---RGEAVVLQFTLFNNLGAEYIADVTLYNV-------ANQTEFVGRPNTDLSYTKSVSVPPK----VGVPISFLIKARK--LGEMAVRVKASETDALEKVIRVMPES-RMDTRFFCFD | |||||||||||||
3 | 3kscA | 0.06 | 0.04 | 0.69 | 0.68 | DisCoVER | -ECQLERLDA--LEPDNRIESEGG----LIETWNP--------NNKQFRCAGVALSRATLQRNA-------LRRPYYSN---------A-PQEIFIQQGN--GYFGMVFCPETRDRHQKVRFRE-GDI-IA--------V-----------PTGIVFWMYN--D-QDTPVIAVSLTDIRSDQMPRRFYLAGNHEQEFLGNNIFSGFKRDFLE-RHIVDLQGKGAIVKVKGL-VCTAKLRLNIGPSSSPDIYNP-------E-A------GRIKTVTS-----DL-PVLRW-------------LKLSAEHGSL-H-KN--------AMFVPHYNL-----------N-------ANSIIYALKGRARLFDGELEAGRALTVPQNY-AVAAK-S-------LSDRFSYVAFKNDRAGIAFLV- | |||||||||||||
4 | 6v81A | 0.10 | 0.07 | 0.67 | 0.67 | DEthreader | PAAVSVVMLSESLVLSFGRST------PDGQGRGPFS-ALYGNASGVMNVTTQ-----------------------------KLSLIFNSVDIKADD-----PGGLTKAEWKAN-PQQAPR----A---D----TRK-TIKQTQAGLRMMYAGERETTQYQIPMAPQHAGVITLQ------DSNENMSENRKG--LRRDERNL---MWNIDPYRYSSVWFDSNDDNSYRADMNGLKPSTN------------GSKTRIGLLSLA---LFQTDT-EIVVDNAGKTRR---------------------------ELAWDQ-----ASWTWLDATYRSNVC-----CNGNR------MPGIANMGFASIGYGTEARYMGDIMADENTAKAPSYTLV---------N-VGSVIVNESG------- | |||||||||||||
5 | 4i30A | 0.08 | 0.04 | 0.46 | 0.46 | CEthreader | KKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSY------------------PNGDSATVSYDVDLDNVLPEWVRVGLSAS-TGLYKETNTILSWSFTSKLKSTNALHFVFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFDATFTFLIKSSDSIAFFISNIDSSIPSGSTGRLLGLFPDAN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 2qqmA | 0.08 | 0.05 | 0.65 | 0.90 | EigenThreader | ----------PECSQNYT-------TPSGVIKSPG----------FPEKYPNSLTYIVFAPK--------MSEIILEFFDLEPCRYDRLEIWDGF-----------------------------------------PDVGPHIGRYCGQKTPGRIRSSSG------------ILSMVFYTKEGFSANYSVLQSSVSFKCMTNWSAERSR-------LNYPENGWTPGEDSYREWIKPATWETGISYPCSGMLG-----MVSGLISDSQ----ITSSNQGDRNWMPENIR---------LVTSRSGWALPQIDLGEEKIV------RGIIIQGGKHRE----------------NKVFMRKFKIGYSNNGSDWKMISFEG---NNNYDTPEFPALS----TRFIRIYPATH----GGLGLRME | |||||||||||||
7 | 6m5aA1 | 0.15 | 0.06 | 0.37 | 0.38 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------QLGFVGDTAYWDQSRS-GFTVTVNADGSN------------QT-LNED--ASQRKQ--------------------TPSYFTSLFQTGGK--SLKI-----------K--EVK--------------------YITYNNVMVA---NLTVESTQ--DRDVTLTTASPFAAE------------GADATELTGRVNVKNNLTT--IYPRF-SANNQDGSSGGKLTTLSLKANEPQTVKIQLGLIANELPD------ | |||||||||||||
8 | 2qsvA | 0.11 | 0.05 | 0.44 | 0.57 | MRFsearch | -----------------------------------------------------------------------EGVVRLVVNNTDESDLQVAVVSLPSFVSLDD---------------------------------------RAFRLQAREPRELNLSLAVPRN----PPGKDEPLVLEVTAVDSVVSLPLVDN------------------------------FPALTAAQTGVELSTLDGQLDTTKAAIEIRNVG----------AGPLRLHSVTTR---------------------------NPALTAVPDRTEIKP-GGSTLLRIAVDPQVKAEG--------------WQSIAADISIICNDP--QAPLRRIKVKAE---------------------------------------- | |||||||||||||
9 | 3q2vA | 0.09 | 0.08 | 0.88 | 0.64 | FFAS-3D | ---ENEKGEF--PKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIERETGWLKVLYSHAVSSNGEAVEDPMEIVITVTDQNDNRFEGSVAE-----GAVPGTSVMKVSATDADDDV--NTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG---------------LDRESYPTYTLVVQAADLQGEGLSTTAK----------AVITVKDINDNAPVFNPSTYQGQVPE--NEVNARIATLKVTDDDAPNTYTVVNDPDQQFVVVTDPTTNDLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIRVEVPEDFGVGQDTFMDQKITYRIWRDTANWLEGAIFTRAEEDAEHVKNSTYVALIIATDDGSP------IATGTGTLLLVLLDVNDNAP------- | |||||||||||||
10 | 4zchA | 0.09 | 0.08 | 0.85 | 0.79 | SPARKS-K | WQPALRRGR-----GLQAQGYGRIQDAGVYLLYLFQDVTFTMGQVVSREGQRQETLFRCIRSMPHPDRAYNSCYSAGVFHLHQGDILSVIIP-------RARAKLNLS-------PHGTFLGFVKQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKILVKETGIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSL---------------VTLFRCIQNMPETLPNCYSAGIAKLEEGDELQLAIPREN----AQISLDGDVTFFGALKLLGVT------QDCLQLIADSETPTITFVPWLLSFKRKILVK----ETGYFFIYGQVLYTDK---------------TYAMGHLIQRKKVHVFGDSLVTLFRCIQNMPETLPNAGIAKLEEGDELQLAIQISLDGDVTFFGALKLL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |