>PF11840 (503 residues) QQTDKHEESYSEAHKPASEFEQRSDYLDHELQIMKPRRWGLNLPGRDFRFEMEDFVPAIA GTIGISVMYSAVMTAWATGLTAKWPHVNLGAEWIIEVVRVEMLIPALIFCIIGSGFLNPR ANLAGNHGPMIPLIGSIALAGAHPLALAALVCLFGLLLSYFKGGSRLVNLTSQGVAGGLL VFLGFMGAKGQITSLFTWAGGLQAKHDLAYSLSYVALAIFAVNIVLYAFLAKVGKRWLAI PACSVVAVVLALALGAGVDLQFTTAPGLPNMNPWYWWGSTETGWQLGIPGFNHFVASLPW AILAVAMWSPDFLGHRIFQELNYPKNTDKVLMDVDDTMTCCSLRQFTGTFFGGGNITSSW GTYMIPAAIAKRPIPAGAILLGTLCIVIATIGYPMDVAVWQPVMSCALLVGVFLPLLEAG LQMVKSSNDTNSAGICIFAAIVTNPVLAWAITMFLDNNGLIGDKERAERLSFADRIVIPA GAVIICTLAMAAVGMLPGIPALL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | QQTDKHEESYSEAHKPASEFEQRSDYLDHELQIMKPRRWGLNLPGRDFRFEMEDFVPAIAGTIGISVMYSAVMTAWATGLTAKWPHVNLGAEWIIEVVRVEMLIPALIFCIIGSGFLNPRANLAGNHGPMIPLIGSIALAGAHPLALAALVCLFGLLLSYFKGGSRLVNLTSQGVAGGLLVFLGFMGAKGQITSLFTWAGGLQAKHDLAYSLSYVALAIFAVNIVLYAFLAKVGKRWLAIPACSVVAVVLALALGAGVDLQFTTAPGLPNMNPWYWWGSTETGWQLGIPGFNHFVASLPWAILAVAMWSPDFLGHRIFQELNYPKNTDKVLMDVDDTMTCCSLRQFTGTFFGGGNITSSWGTYMIPAAIAKRPIPAGAILLGTLCIVIATIGYPMDVAVWQPVMSCALLVGVFLPLLEAGLQMVKSSNDTNSAGICIFAAIVTNPVLAWAITMFLDNNGLIGDKERAERLSFADRIVIPAGAVIICTLAMAAVGMLPGIPALL | |||||||||||||||||||
1 | 6rtcA | 0.13 | 0.11 | 0.84 | 3.78 | HHpred | PRYVVDRAAYSL-----SLFDDEFE--KKRCSSAKKAFVFGLLPLPKYKIDYPDLLGGL--SGGCIQVPQ---------GMAFALLANLPAVNGLY-------------SSFFPLLTYFFQMVPGTFAVISILVGNICLQLAVSATLACLTAVIQMALGFMQFGF-VAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIPVFDICKNLP-HTNIASLIFALVSGVFLLVKELNARIPTEMIVVVVATAISGSCKMPK------KYHMQIVGE--IRQ-GFPT--PVAPMVSQWKDMVGTAFSLAIVGYVINLMGRTLAS----KHG--YDVDSNQEMIALGCSNFFGSFFKIHICCALSVTLA-VDGAGGKSQVASLC-VSLVVMITMLVLGSYLYPLPKAVLGALIAVNLKNSQLTDPYYLWRKSKLDCCVVVSFLSSFFLSLPYGVAVGVAFSILVVIFQTQFRNTVMDTDIY--------------------------- | |||||||||||||
2 | 5sv9A | 0.09 | 0.07 | 0.84 | 1.69 | SPARKS-K | ---------------IWLDLKDRIPYYKS------------------------DWVDAFRVIPSTVDTYFNNLLPAIAFAQDMFDRTDYGVNEVLLSSAMAGIVFGVLAGQ--------PLCIVGVTGPISIFNYTVYEIIGFMFWICLWSMIFHLLLAFTNVV-CLLQYVTTFPCDIFGLFINVVYIQKGIQILTRQFHN--TSGEKSVQDGFASVVVALVMTAFGLFFKSFHHTFISDYSTALSVLFWSSFTHNDVKFKKLPITFFPTSKFNRPQNTWLAYEP---IPVKDVFIALPFGIILTILFYFDHNVSSLMAQRHQYKLRKPS--SFHYDFALLGLTTCISGVLGIPPNGLIPQAPLHTETRDSNQNVVRCVEQRLTNTFQGLMILGTMTRPLLVCLGEAVLSGLFFIMGINVIIHRIVFNNSPLAKSMVIFLCFSLAGFTGEFAITNTIA--------------------AIGFPLVLLLSVIVSFSFTY----- | |||||||||||||
3 | 5i6cA | 0.08 | 0.07 | 0.85 | 1.32 | MAPalign | -----------------------------------------PFFGLNEKIPVLLAFILG--LQHALAMLAGVVTPPLIISSSLS----LPSDLQQYLVS--TSLIVCGLLSMVQIIGSGVLSVMGVSFSIISVASGAFNAYGALIGTSACCALVEILLAF-VPPKVIQKIFPPIVTGPTVMLIGISLIGTGFKDWMDDLCPSATAPRPLPWGSPEFIGLGFLVFVSIILCERFGMKSCSVVIGLLVGCIVAAACGY-------------FSHADIDAAPAASFIWVKTFPLSVYGPMVLPIIAVFIICACECIDVTATCDVRLEVRGGTFESRIQGAVLADGINSVVAALATMTPMTTFANNVVIAL--TRCANRWAGYCCCLILIVAGIAKFAAAIVAIPNSVMGGMKTFLFASVVISGQAIVFTRRNRFILTASMALGYGATLVPTWFGNVFPQTENRDLEGFENAI---ELVLETGFAVTAFVAMLLNAIMP-------- | |||||||||||||
4 | 6rtcA | 0.13 | 0.12 | 0.90 | 3.61 | HHsearch | PRYVVDRAAYSLS-----LFDDEFE--KKRCSSAKKAFVFGLLPLPKYKIDYPDLLGGL--SGGCIQVPQ---------GMAFALLANLPAVNGLY-------------SSFFPLLTYFHQMVPGTFAVISILVGNICLQLAVSATLACLTAVIQMALGFMQFGF-VAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIPVFDICKNLP-HTNIASLIFALVSGVFLLVKELNARIPTEMIVVVVATAISGSCKMPK------KYHMQIVGE--IRQ-GFPTP--VAPMVSQWKDMVGTAFSLAIVGYVINLMGRTLAS----KHG--YDVDSNQEMIALGCSNFFGSFFKIHICCALSVTLA-VDGAGGKSQVASLC-VSLVVMITMLVLGSYLYPLPKAVLGALIAVNLKNSQLTDPYYLWRKSKLDCCVVVSFLSSFFLSLPYGVAVGVAFSILVVIFQTQFRNQVMEIAGVKISPLYFANSEIFRQKTGMDGTFHTLI | |||||||||||||
5 | 5da0A | 0.14 | 0.10 | 0.73 | 2.01 | FFAS-3D | ----------------------------------------------------KDVLAGIV--------VALALIPEAIAFSII---AGVDPQVG--------LYASFIIALITAFLGGRPGMISAATGAMALLMTGLVKDHGYLFAATVLTGVLQVVFGWAKLA-RYLKFVPRSVMVGFVNALAILIFMAQLPQFVG--------------ANWQMYAMVAAGLAIIYLLPLVFKAMPSALVAIVVLTVVAVVTGADVKT-VGDMGTLPTALPHFQFPQVPL-------TFETLAIIFPVALTLSLVGLLESLLTAQLID-----ERTDTTSDKNVESRGQGVANIVTGFFGGMACAMIGQSMINVTSGGRGRLST--FVAGAFLMVLILALQPLLVQIPMAALVAVMMVVAISTF---DWGSLRFPKGETVVMLATVAVTVFDLSLGVLIGVVLSALFFARKVSQLSQV--------------------------------- | |||||||||||||
6 | 5da0A | 0.13 | 0.10 | 0.74 | 3.55 | HHpred | ----------------------------------------------QREWNPKDVLAGI----------VVALALI--PAIAFSIIAGVDPQVGLY-------------ASFIIALITAFGMISAATGAMALLMTGLVKDHGYLFAATVLTGVLQVVFGWAKLA-RYLKFVPRSVMVGFVNALAILIFMAQLPQFVGA--------------N-WQMYAMVAAGAIIYLLPLVFKAMPSALVAIVVLTVVAVVTGADVK--T-----VGDMGT--LPT-ALPHFQFPQPTFETLAIIFPVALTLSLVGLLESLTAQLIDE----RTD--TTSDKNVESRGQGVANIVTGFFGGMGCAMIGQSMI-NVTSGGRGRLSTFV-AGAFLMVLILALQPLLVQIPMAALVAVMMVV-AISTFD--WGSLRPKGETVVMLATVAVTVFHDLSLGVLIGVVLSALFFARKVSQLSQVTPVDGTRT------------------------- | |||||||||||||
7 | 4yzfA | 0.12 | 0.10 | 0.83 | 1.68 | SPARKS-K | --------------GLVRDIRRRYPYYLSD--------------ITDAFSP--------QVLAAVIFIYFAALSPAITFGGLLGEKTRMGVSELLISTAVQGILFALLGA--------QPLLVVGFSGPLLVFEEAFFSFCETRVWIGFWLILLVVLVVAFEG-SFLVRFISRYTQEIFSFLISLIFIYETFSKLIKIFQDHPLQKTYLPNTALLSLVLMAGTFFFAMMLRKFKNRRVIGDFGVPISILIMVLVDFFIQDTYTQKLSVP--------DGFHPLGLRSEFPIWMMFASALPALLVFILIFLESQITTLIVSKPERKMVKGS--GFHLDLLLVVGMGGVAALFGMPLSATTVRSVTHANAVMIQEVKEQRISGLLVAVLVGLSILMEPILSRLAVLFGIFLYMGVTSQLFDRILLLFKPPKTGIQIICLAVLWVVSLALPFVLILTVPLRRLIFRNVELQCLD-------------------------------- | |||||||||||||
8 | 7ch1A | 0.12 | 0.10 | 0.88 | 1.29 | MAPalign | ----------------------TLFDDEFEKSAKIKAVVFGLLPVLSWLPKYKIKDYIIPDLLGGLSGGSIQVPQ----GMAFALLANLPAVNGLYSS---------FFPLLTYFFLGGVHMVPGTFAVISILVGNICLQLHVSATLACLTAIIQMGLGF--MQFFVAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIVFTFIDICKNLTNIASLIFALISGAFLVLVKEIRFPIPTEMIVVVVATAISGGCKMPKKYHMQIVGEIQRGFPTPVS-----------PVVSQWKDMIGTAFSLAIVSYVINLMGRTLAN------KHGYDVDSNQEMIALGCSNFFGSFFKIHVICCLSVTLAV------DGAGGKSQVASLCVSLVVMITLGIYLYPLPKSVLGALIAVKNSLKQLTDPYYLWRKSDCCIWVVSFLSSFFLSLPYGVAVGVAFSVVNPKTYNRAQCSPLYFANSEIFRLMGIKALAKLSSTYGVFEDGSLE | |||||||||||||
9 | 7ch1A | 0.13 | 0.12 | 0.89 | 3.61 | HHsearch | PRYVVDRAAYSL-----TLFDDEFE---K--SAKIKAVVFGLLPLPKYKIDYPDLLGGL--SGGSIQVPQ---------GMAFALLANLPAVNGLY-------------SSFFPLLTYFHQMVPGTFAVISILVGNICLQLHVSATLACLTAIIQMGLGFMQFGF-VAIYLSESFIRGFMTAAGLQILISVLKYIFGLTIPVFDICKNLP-HTNIASLIFALISGAFLLVKELNARIPTEMIVVVVATAISGGCKMP------KKYHMQIVGE--IQR-GFPT--PVSPVVSQWKDMIGTAFSLAIVSYVINLMGRTLAN----KHG--YDVDSNQEMIALGCSNFFGSFFKIHICCALSVTLA-VDGAGGKSQVASLC-VSLVVMITMLVLGIYLYPLPKSVLGALIAVNLKNSQLTDPYYLWRKSLDCCIWVVSFLSSFFLSLPYGVAVGVAFSVLVVVFQTQFRNRAQDIQGIKIIPLYFANRQKVIAKTGMDPTFHTLI | |||||||||||||
10 | 4yzfA | 0.11 | 0.09 | 0.85 | 1.96 | FFAS-3D | ----------------VRDIRRRYPYYLSDIT---------------DAFSPQVLAAVIFIYFAALSPAITFGGLLGEKT-----RNQMGVSEL--------LISTAVQGILFALLGAQPLLVVGFSGPLLVFEEAFFSFCETRVWIGFWLILLVVLVVAFEGS-FLVRFISRYTQEIFSFLISLIFIYETFSKLIKIFQDHPLQKTYLPNTALLSLVLMAGTFFFAMMLRKFKNSSFGVPISILIMVLVDFFIQDTYTQKLSVPDGFKVVI--------HPLGLRSEFPIWMMFASALPALLVFILIFLESQITTLIVSKPERKMVKG--SGFHLDLLLVVGMGGVAALFGMPWLSATTVRSVTHANALTVMIQEISGLLVAVLVGLSILMEPILSRIPLAVLFGIFLYMQLFDRILLLFKPPKYHPDVPYVKRVRMHLFTGIQIICLAVLWVV-------------------KSTPASLALPFVLILTVPLRRV-LLPLIF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |