>PF11790 (246 residues) GLVYIPSDHPSDDQIWVADNSDLTWYYDYKDIPAAAYSNRTQQEFEFVPMLWGSANSSGF ASEIKSQIATGRNITHILTFNEPDGTSSTGGSEISPADAASIWIDDIEPLRNENVKIGAP SVTGSQSGLTWLSEFFSNCTSLKTNCTVDFIPLHWYGNFQGLASYLGQVVATYPNTSIWI TEYALAHADLKDTQAFFQTSAEYFDRLDYVERYSYFGSFRSSISNVGPNATMLTQNGQLT DIGSWY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | GLVYIPSDHPSDDQIWVADNSDLTWYYDYKDIPAAAYSNRTQQEFEFVPMLWGSANSSGFASEIKSQIATGRNITHILTFNEPDGTSSTGGSEISPADAASIWIDDIEPLRNENVKIGAPSVTGSQSGLTWLSEFFSNCTSLKTNCTVDFIPLHWYGNFQGLASYLGQVVATYPNTSIWITEYALAHADLKDTQAFFQTSAEYFDRLDYVERYSYFGSFRSSISNVGPNATMLTQNGQLTDIGSWY | |||||||||||||||||||
1 | 2bfgA | 0.11 | 0.11 | 0.97 | 1.33 | DEthreader | VGTGRGLLQKEYLDHLKQEKIGFRYIRGHGLYIDRIVDSYLALNIRPFIEFGFPPWRDLIVAVVSHFIERYGEVWLFEVWNAPNLV-NF-WKDANKQEYFKLYEVTARAVKDPHLQVGGPAICGG-S-DEWITDFLHFCAER--RVPVDFVSRHAYTEPEDMLEQFKTVRALIRHLPLHITEYNTSNVDTALNAAYIARILSEGGDY--VDSFSYWTFSDFVPKAFHGGFGLVALHSIPKPTFHAF | |||||||||||||
2 | 3ahxA | 0.13 | 0.13 | 0.98 | 1.33 | DEthreader | GTATAEGADYHRYKDVQLKSLGIKSYRFSIAFYRDLIDELIKNDIEPAITIYWWVYYDYANLLFREFG--D-RVKTWITHNEPWVSYLGYHPALLAHNILLSHFKAVKAYRELQGQIGITLNLSTDWNNRWLDAALKGTYFTEVFETSDFLGINYYTYPQGLYDLLTRIHRDYGNIDLYITENGAAFNDDENRLDYLYTHFAAALSIVPLKGYYIWSFMDNFEGYEKR-FGIVHVERTIKKSAYWY | |||||||||||||
3 | 6uaxA | 0.24 | 0.22 | 0.93 | 5.21 | HHpred | GLAYGYHS-KADMDVL---SPAVSWWYNWTHVPDEGVRPYRTLGVDYVPMVWGGGNLDS-AAAGRIASEIPEGARFLLGFNEPNFG---AQADLSAAEAAALWPHVEAVADARGLALVSPAVNFCGDPFKYLDDFFAACS----GCRVDYIGIHIYTGQQWLINHVETYKSRF-DKPLWLTEFACDSASLAEQKEFLVDALAYLENEPRIAKYAWFSGRADNV----RHASLLGDDGELNELGQAY | |||||||||||||
4 | 6ub2A | 0.29 | 0.27 | 0.92 | 1.13 | DisCoVER | RGLAWPWYNSLDPGVLNNGDGEVVAIYDWETYAP-PTSTGTGG-LGFIGMQGTMDSS-PVAQLA-TRQAQ-QGWATVFSLNEPDI------NGITPAEAASWYIEWVN-P--LAIKKALPAVTSSTQGLSWLSEMISACAGA---CYFDYINLHWYGTFAEFQAYIEQAHNQFPSYTIVISEFALTNGGN--QVAFFESAFPFLDGLSYVLLYFPFVATSLLNAVVGTGSCLYTNAGGPSSVGNM- | |||||||||||||
5 | 6ub8A | 0.24 | 0.22 | 0.93 | 0.78 | MRFsearch | VLLWDYTNTRDVKWAMDKIKGPLHSCSNWNTWYPDELKH----RLPFRPMIHGKNN--LTGGEWQNILKTN--EEVIHFFNEPERA------GISPEEAAKIWNDQVLALRTHHKRLVSPSCASDPAGIAWIKKWMNLVAK----NPPDYLGLHWYGTGDEMIRYLESMHKEHPHQPIIVSEWASTSRSYPDVLGLTVQLANWMDSTPWVAEYALFGCMRQMDDFVSPEAQLMNKDGSFTDLMWKY | |||||||||||||
6 | 6ub8A | 0.25 | 0.23 | 0.92 | 1.73 | SPARKS-K | VLLWDTRDVKWAMDKINFK-GPLHSCSNWNTWYPDELKH----RLPFRPMIHGKNNLTG--GEWQNILKTNEE--VIHFFNEPERAG------ISPEEAAKIWNDQVLALRTHHKRLVSPSCASDPAGIAWIKKWMNLVAK----NPPDYLGLHWYGTGDEMIRYLESMHKEHPHQPIIVSEWASTSRSYPDVLGLTVQLANWMDSTPWVAEYALFGCMRQMADFVSPEAQLMNKDGSFTDLMWKY | |||||||||||||
7 | 4ha3A | 0.14 | 0.14 | 0.98 | 0.39 | MAPalign | GWSQAGPGYWGNYRKFHAQAMGLTAARIGVREMFSDL---RSRGITFILNLYHWRTVIEFAKFSAYVAWLDDLVYMYSTMNEPNGYAFPPGYLRAMKNLVQAHARAYDAVKAITKPVGVIYNSDAERAKDNRWAFFDAVVRLDLKGRLDWIGVNYYDFPEGLYNVLKEYWDRY-HLPLLVTENGIADEGDYQRPYYLVSHVYQVHRAVNVIGYLHWSLADEWASGFSKRFGLLMVRLHWRPSAFIY | |||||||||||||
8 | 6uavA | 0.23 | 0.21 | 0.93 | 0.38 | CEthreader | GVAYDVASPADLSALSTG----MSWWYNWSPKPHDRLAAYDQYNVDFVPMVWNANLD---DGQLKLYLLAHPGIRYLLVINEPNL---VDQANMTPQAAAQLWPRLEQISAQTGVKLVGPAMNWYGDPVAWLDAFYAAYASAHRDPQIDYLAFHWYDY--GLSSMLDRLSRY--GKPFWVTEFANWIDSLEKQKQQMAEMVTMLERRSDVFRYAWFTGRMT---PDPHFSSLLDAEGRLTELGQYY | |||||||||||||
9 | 1fobA | 0.14 | 0.13 | 0.96 | 0.79 | MUSTER | GIVWVPSDGSYDLDYNLEKAAGMSLYLDLHLSDTWADPSDQTTPSG-----WSTTDLGTLKWQLYNYTLE-IDIEIISIGNEIRAGLLWPLGETSYSNIGALLHSGAWGVKDSNLKIMI--HLDDGWSWDQQNYFYETVLATGELLSFDYFGVSYYATLASLKTSLANLQSTY-DKPVVVVETNWPVFSVAGQQEFLEKLAAVVEATTDGLGVYYWEPAWIGNAGLGSSCLMVDYTDEVYESIETL | |||||||||||||
10 | 6ub7A | 0.24 | 0.22 | 0.92 | 1.90 | HHsearch | GISWPAQELTSDPIKFFQHGSKLSWHWNWTKWKGPLVSDDLEIDAEFVPMIWSPQSLDDGCDL-------QEGWDLLLGFNEPDLD----ASHRSPQEAADVWIQLAQL-RTDNQHLVSPAVASN---VEWLKEFLSLIP-E--ETYPTYLAVHLYTTFDDFVGKMEMYHNEF-GLPIILTEFCMQSWDQQQVHDYMGQTTKWLDETDYIIKYCWFGAVRDTAHDVHPFNRLMDEHGEITPLGFQY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |