>PF11768 (548 residues) KRLYFESRGCKWSVDNKKPNRLRNALKLLEEELKQRRIAFCKWKNNVILQIMLSNGLLIH IFINPFNGDINRVYFDKYFIGKLISEQITDVIITQTHILISYNENQITFVHLQKPTARKN NLEKISLMDPKIYNVIIGGPTARKIPKHLVCSSSQEMVIVWTKSSQNEVYPWRPTVKDQD RANLHVYKLNGAKMELLCYYWTEYDPISVDFSLLNGFQVHSVEQKISKKGDVTIDSCIYQ IHKTKMRRVAVTSIPLQTQVCCNAFSPDHEKLMLGCIDGSVVLFDEGRGITHLVKAAFIP TFVSWHSDSSIVMIANEKGQLQCFDIALSCVRTQLMSEDVVPSSILDLSNYFAHPYNLAK LCWSRKPEITEHFEKNAITDCFLLLAFENGPLGCVRFVGGTGLKGDVHTSGLTADVLIHK YISLNQVEKAINILLSLNWDTYGAMCLLSLHRIANYIFKQPLGTERELQLQKALGSFLVP VKPLCYETEVEFGDQVNDITLRFFHYLLRNKSYNKAFSLAIDINDADLFLKLHDKAKTDG DVELAKEA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KRLYFESRGCKWSVDNKKPNRLRNALKLLEEELKQRRIAFCKWKNNVILQIMLSNGLLIHIFINPFNGDINRVYFDKYFIGKLISEQITDVIITQTHILISYNENQITFVHLQKPTARKNNLEKISLMDPKIYNVIIGGPTARKIPKHLVCSSSQEMVIVWTKSSQNEVYPWRPTVKDQDRANLHVYKLNGAKMELLCYYWTEYDPISVDFSLLNGFQVHSVEQKISKKGDVTIDSCIYQIHKTKMRRVAVTSIPLQTQVCCNAFSPDHEKLMLGCIDGSVVLFDEGRGITHLVKAAFIPTFVSWHSDSSIVMIANEKGQLQCFDIALSCVRTQLMSEDVVPSSILDLSNYFAHPYNLAKLCWSRKPEITEHFEKNAITDCFLLLAFENGPLGCVRFVGGTGLKGDVHTSGLTADVLIHKYISLNQVEKAINILLSLNWDTYGAMCLLSLHRIANYIFKQPLGTERELQLQKALGSFLVPVKPLCYETEVEFGDQVNDITLRFFHYLLRNKSYNKAFSLAIDINDADLFLKLHDKAKTDGDVELAKEA | |||||||||||||||||||
1 | 5n4aA | 0.10 | 0.08 | 0.81 | 5.37 | HHpred | -----------------------------------------------MRLKVKQSELTAAVGWNVWN-ELFTCSDDQTIGEPELDAYFTDMHWYPVVFAVACTDGSVKILSR-T----GRVEKSIEGHKGACISLRWS-YDG-----TALATAGEDGSVKIWSR-NGMLIVWAYLCYCTGSNVIKSLSSNA-KQ--NAWKAHDGVVLKVDWSPINH-LI----ITGGEDCKYKV----WDSF-GRLLFQ---SGLFDYPVTSVAWAPSGELFAVGGFN-TLQLCDRMGWAYSKHNDTGSIMTLSWTADSTQLAGGGGSGGVVFGQVVDEN-ADELPEVSLGYGYLIVATATLLDNSAGIQI-YTYEGRQICRTEASAQGRPVGEPWQHTLEVKEIALSQAGTIND--------------RQLIVIDRNRDLYL-----LPV-MK---RHVAKLAAMCDSARWHDSTA-MLSAMRLCVWYYPSEVYVDDLLAKTRYTKDSDFRVLYDMIRKQQWDKATRLCRFIKDPTMWATLAAMAMAAKELNTAEVA | |||||||||||||
2 | 4bzjA | 0.09 | 0.07 | 0.84 | 1.73 | FFAS-3D | -----------------------------------------------------HDKIPLLVSGTVSGTVDANFSTDSSLASLQVDSKFNDLDWSNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF-NAKQDNV----LASGGNNGEIFIWDMNKCTESTPGQSMSSVDEVISLAWNQSLAHVFASAGSSIKQQLSVVEWHPKNSTRVATAT-----GSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWHQDEHLLLSSGRDNTVLLWNPESALSQFPARGNWCFKTKFAPEADLFACASFDNKIEVQTLQNLTNTLDESKEKPSVFH---LQAPTWYGEPSPAAHWAFGGKLVQITPDGKG----------------VSITNPKISGLESNTKTKDFKPLINQRLVKVIDDVNEED-----WNLLEKLSMDGTEEFLKEALAIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSAQRNEMLIKLGDRLKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDN | |||||||||||||
3 | 5mzhA | 0.10 | 0.06 | 0.63 | 1.44 | SPARKS-K | LSQIIRQEP---LISENRRPALRQLIHRLIDKMLEFT---------LFKVLRAHILPLTNCAFNKSGDRFITGSYDRTCKVWNHKNVVYAIAFNNDKIVTGSFDKTCKLWDA----YTGQLYYTLKGHQTEIVCLSFNP------QSTIIATGSMDNTAKLWDVETGQE----------------RATLAG----------HRAEIVSLGFNTGGD-----LIVTGSFDHDS----RLWDVRTGQC---VHVLSGHRGEVSSTQFNYAGTLVVSGSIDCTSRLWDVRSGCLSVKQHTDEVLDVAFDAAGTKMVSASADGSARLYHTLTGVCQHTLSKVAFNPQGTRLITASS---DKTCRLWDCDTGEC------------LQVLEGHTDEIFSCAFNYEGDF------------------IITGSKDNTCRIWKALT-------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3sfzA | 0.10 | 0.08 | 0.76 | 2.38 | CNFpred | --------------------EVYRQAKLQAKQEGDTGRLYLEWINLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFK-EDEVLCCAFSSSYIATCSADKKVKIWDSA----TGKLVHTYDEHSEQVNCCHFTNKS----NHLLLATGSNDFFLKLWDLNQ-NHCRFSLLASCSADGTLRLWDVRANERKSINVKRFEVIVKCCSWSADG-DKIIVAAK---------NKVLLFDIHTSGLLAEIHTGH--HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-SWVHGVMFSPDGSSFLTASDDQTIRVWETKK-IVLKQEIDVVFQENETMVLAVDNI--RGLQLIAGKT----------------GQIDYLPEAQVSCCCLSPHLE------------------YVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRHIQFTADGK-TLISSVIQVWNWQTGDYVFLQA-HQETVKDFRL----------------------------------------------- | |||||||||||||
5 | 2ymuA | 0.12 | 0.10 | 0.86 | 1.07 | MUSTER | RNRLEAHSSSVRGVASPDGQTI----------SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTLTG--HSSSVRGVAFSPDTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFS-PDGQT-----IASASDDKTVKLWNRNGQLLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTSSSVRGVAFSPDGQT-----IASASDDK----TVKLWNRNGQ----LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPLTGHSSSVRGVAFSPDGQTIASASDDRNGQLLQTLTGHSSSVWGVAFSPDDTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-----WNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS-KTLWNRNGQL-LQTLTGHSSSVWGVA---FSP----GQT-----IASASSDKTVKLN----------------- | |||||||||||||
6 | 3iytA | 0.11 | 0.09 | 0.81 | 6.37 | HHpred | ----------LCEPETS---EVYQQAKQAKQEVDKQRIASQVFKAEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVTGEYHSEQVNCCHFTNSLLATGSSDCFLKLWDLNQ----KECRNTMFGHTNSVNHCRFS-PDD-----KLLASCSADGTLKLWDATSANELNLEDIMVAA-KNKIFLFDIHSGLLGEI-HTGHHSTIQYCDFSPQNH-LA----VVALSQYCVEL----WNTDSRSKVAD---CRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKQLIGRTAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHQFTADEKTLISS---SDDAEIQV-WNWQLDKC-----------I-FLRGHQETVKDFRLL-KN------------------SRLLSWSFDGTVKV-----WNIITGNKEKDFVCHQGTVLSCDISHDAT-KFSSTTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI-WNVSN----------------------- | |||||||||||||
7 | 5n4aA | 0.10 | 0.08 | 0.83 | 1.73 | FFAS-3D | ------------------------------------------------MRLKVKQSELTAAVGWNVWNELFTCSDDQTIHKSTLDAYFTDMHWYTDVFAVACTDGSVKILS-----RTGRVEKSIEGHKGACISLRWSY------DGTALATAGEDGSVKIWSRNGMLRST---LAQADSPVYSIVWAYDCDQLCYCTGSNVDGVVLKVDWSPINHLIITGGE---------DCKYKVWDSFGRLL----FQSGLFDYPVTSVAWAPSGELFAVGGFN-TLQLCDRMGWSKIHLNDTGSIMTLSWTADSTQLAGGGGSGGVVFGQVVDGKMQVTVVDD-----MRIVVDELPEFRDRVIKVSLGYGYNTTNLGTPQASGTTVRFFWQHTLEVKEIALSQAGTMKRHVAKLAAMCDSARSTAMLSAMVDQRLCV-----WYYPSEVYVKDLLAKTRYTKSDSDFGKSAQIQLFAGNLVRRSDGVLVSAATSPYPAVL--------YDMIRKQQWDKATRLCRFIKDPTMWATLAAMAMAAKELNTAEVA | |||||||||||||
8 | 2ymuA | 0.10 | 0.08 | 0.80 | 1.38 | SPARKS-K | ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNHSSSVRGVAFSPDGQTIASASDDKTVKLWNHSSSVWGVAFSPQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFS-PDGQ-----TIASASDDKTVKLWNRNGQLLQTLTFSPDGQDDKTVKLWNRNGQLLQTLT--GHSSSVNGVAFRPDGQTIASASGVAFSPDGQTIASASLWNRN----GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQSSVWGVAFSPDDQTIASASDDK----TVKLWNRNGQLLQTLTGSSSVRGVAFLTGHSSSVRGVAFSPDGQ------------------TIASASDDKTVKLWNR------NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN------------------------------------------------------------------ | |||||||||||||
9 | 2ymuA | 0.12 | 0.09 | 0.75 | 2.29 | CNFpred | ------------------------------------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-SSSVWGVAFSPQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSP------DGQTIASASDDKTVKLWNRNG-NGVAFRTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDG-QTIASASDD--------KTVKLWNRN----GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-GHSSSVWGVAFSPDDQTIASASD---DKTVKLWNRN-------------GQLLQTLTGHSSSVRGVAFSPDGQ------------------TIASASDDKTVKLWNRN-------QLLQTLTGHSSSVRGVAFSPDGQTIASASTVKLWNRNGQLLQTLTG-HSSSVWGVAFS-----------GQTIASASSDKTVKLWN------------------ | |||||||||||||
10 | 5wlcLO | 0.12 | 0.10 | 0.81 | 1.02 | MUSTER | KSDFKFSGNITFSDDGKQ-------L--------GNRVSVFDLINNKSFTFEYHRKNIAAIDLNKQGTLLISIDEDGNVLHHFNFKEVNTVSVNQEWLAFGSSLGQLLVYEW----QSESYILKQQGHFDSTNSLAY-SPDGS-----RVVTASEDGKIKVWDITSGFCL--ATFEEHTSSVTAVQFAKRGQVMFSSSLDGTRIQFNCLAVDPSGE-----VVCAGSLDNF---DIHVWSVQTGQ---LLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRQVEPIEVYSDVLALSMRPDGKEVAVSTLKGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFSERSKFFTTIHYSFDGMAIVAGGNN---NSICLYDVPNELLKRFIVSRNMALNGTLEFLNSKKMTEAGSLDLIDDAGEN-RIDNSLPGSQRGGDLSTRKMRPEVRVTSVQFSPTANAFAAASTEGIYSTNDTI---------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |