Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | RRGMSGFPLGVFIGYTITIILSLFWGEGYYWAVVPALVEQCGNEINAVILQFILSGVLGSVCAASSVIWENDNWSILKQTVIHFVIISFTMLPIAYFAHWMDHTFIAIVKYFCIFIAIYIAIWAVEYSVWKHKINQINDKI |
1 | 4a01A | 0.06 | 0.06 | 0.92 | 1.00 | DEthreader | | --AFAAGFLLAANGLFSYAESSCA-ALVVAS---F--NHELTAML-YPLIVSSVGILVCLLTTLFATDFFEIKAEIEPALKKQLVISTVLMTIGVAVVSLFLCVAVGLWAGLIML--ITGLAIDAYGPISDNAGGIAEMAM |
2 | 5kbwA | 0.13 | 0.13 | 1.00 | 1.08 | SPARKS-K | | SFVGIFSALATLVMFLPALIVSFLLGPGVGMFVVLVKDILFFLMKSGDPVGIAMNAVLGMSFVGIAGLIYHRNATAIKGMIVATLFATAFALGLNALIVPLYFPFELYLKFFPFILAFNLVKFGIDSVVTFFVYKKVSSIL |
3 | 6ffvA | 0.10 | 0.09 | 0.87 | 1.17 | DEthreader | | -RALWVVPALIAASVVIDYVAITWGG-VSDFCV---S---------P--AY-WLLIPAYLALFAGGRFYARGHSGLFRLAGVALAVVAVAQLLTTGGFYSRFGLVLRLEKYFPPMLGTFALYVGLAATVHVALAAVFRRR- |
4 | 4av3A | 0.05 | 0.04 | 0.91 | 1.00 | DEthreader | | GFALSGGFALLLLFVGAIVSSIIL-ASYMF-------PKET--IQALISYPIFFALVGLGCSMLGILYVIVKPSELNISLWTSALLTVVLTAFLTYFYLKGAIS--PWFSAIIGIFGMLSFVTSVSVDSYGPIADNAGGIS |
5 | 4rfsS | 0.09 | 0.09 | 0.95 | 1.03 | SPARKS-K | | TVIVAGSADGLLIGGFWGLITFVRAFTW---PSSPVAPLIFTNPLISILPRLL----MGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERL |
6 | 4rfsS | 0.13 | 0.11 | 0.84 | 0.58 | DisCoVER | | AGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLI------FT-NPLISILPRLLMGLVAGSLYLWGRHRQWSM---RQAMQVAAGCAALTNTVLVSLTNG--IPELILDVLVAPLI---AMPLRRQWERL-------- |
7 | 6ffvA | 0.08 | 0.06 | 0.80 | 1.00 | DEthreader | | RALWVVPLIAASV-ID--AI-------VSDFC------------V-SP-AY-WLLIPAYLALFAGGRFYARGHSGLFRLAGVALAVVAVAQLLTTGGFFYPGLVL-RLEKYFPPMLGTFALYVGLAATVHVALAAVFR--R |
8 | 4rfsS | 0.11 | 0.11 | 0.93 | 0.38 | CEthreader | | ALGPRDGLLIGGFWGLITFVRAFTWPSSPV----------APLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLK |
9 | 4b4aA | 0.07 | 0.06 | 0.97 | 0.68 | EigenThreader | | RYRLIISIIAFLIGSGIAFYFAKY----VFEILKEPILKSYPELIKISLAVGFIIASPVILYQFWRFIEPALYSHERAFIPLLLGSILLFLGALFAYFIVLPLALKFVVAFGIAFLQKAEQLASFRKYFIVIAFVIGAIIA |
10 | 6rkoA | 0.12 | 0.10 | 0.84 | 0.30 | HHpred | | --------------------GYGLLLK-RYTAQIQQATKDSIPRVAPLFRIMVACGFLLLAIIALSFWSIRNRIG-EKKWLLRAALYGIPLPWIAVEAGWFVLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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