>PF11398 (377 residues) MHLESIEILGFRGINRLSLTLDENNVLIGENAWGKSSLLDALSLLLAPTLPLYHFDMQDF HFTPGDENSREKHLQIIFTFCETAPGHHLSPRYRSLSPVWVEGNESLYRVFYRLEGEVDE SQSVFTWRSFLDADGHPIPLDNIDELAREIIRLHPVLRLRDARFMRRLRSGTLAATLDNS NEKLAQQFEQLIRELVQNPQKLTDKELRQGLVAMQQLLEHYFSEQNATGNDRRHHRHART HNGKSWRSLDNINRLIADPNSRSSRIILLELFSTLLQAKGSVVLDPHARPLLLIEDPETR LHPIMLSVAWGLLTQLPLQKVTTTNSGELLSLVPMEQVCRLVRESSRVATYRIGRQGMNA EDSRRIAFHIRLNRPAS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MHLESIEILGFRGINRLSLTLDENNVLIGENAWGKSSLLDALSLLLAPTLPLYHFDMQDFHFTPGDENSREKHLQIIFTFCETAPGHHLSPRYRSLSPVWVEGNESLYRVFYRLEGEVDESQSVFTWRSFLDADGHPIPLDNIDELAREIIRLHPVLRLRDARFMRRLRSGTLAATLDNSNEKLAQQFEQLIRELVQNPQKLTDKELRQGLVAMQQLLEHYFSEQNATGNDRRHHRHARTHNGKSWRSLDNINRLIADPNSRSSRIILLELFSTLLQAKGSVVLDPHARPLLLIEDPETRLHPIMLSVAWGLLTQLPLQKVTTTNSGELLSLVPMEQVCRLVRESSRVATYRIGRQGMNAEDSRRIAFHIRLNRPAS | |||||||||||||||||||
1 | 6qj0A | 0.14 | 0.11 | 0.77 | 1.00 | DEthreader | MRVTELIIDGFKSYARTVITWDEFNAVTGLNGSGKSNILDAICFVLGITNMSVRALQDLIYKRG-Q--AGVTKASVTIVFDNR----DKK-RS--PI-GFEEY---A-TISVTRQIVLG----GTTK-YLIN--GHRAQQQTVQNLFQSVLNPNFLIMQGRI-T----------------K-VLNMKPAEILAMIEEAATRKALETWEKVNGDFGQIFNELLPGSF-----------------VKVRLGKVWKQSLTELSGGQRSLIALSLIMALLQ-FK-P------APMYILDEVDAALDLSHTQNIGRLIKTFKSQFIVVSKDGMFQ-NAN--RIFRVRFSEGTSVVQAL-T------PADLK----------- | |||||||||||||
2 | 5xeiA | 0.14 | 0.11 | 0.80 | 1.00 | DEthreader | PYIEKLELKGFKSYGKVVIPFSGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMARSDLIFAGSKGEP-PAKYAEVAIYFNN-----EDR-GFP--ID-E-------DEVVIKRRVYPD----GRSAYWLN---GRRATRSEILDLLSAISPEGYNLVLQGD-IT--K----FI--K---MS--PLERRQLIDEISIKKNVFMR-TLEAIAKNFSELFAKLSPGGSA---------------EIEAKP---DVKRIEAMSGGEKALTALAFIFAIQRFK--P------APFYLFDEIDAHLDDANVKRVADLIKESESQFIVITLRDVMMANAD--KIIGVSMRDGVSRVVSL---------SLEKAMKILEEAKK- | |||||||||||||
3 | 6p74A | 0.17 | 0.15 | 0.87 | 4.48 | HHpred | -MLKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVPSLRSFRIQDFINFD-----TTRAIEITVHFDPPYTQGSFN-ITFRL--TCKGE-DADFHVDLEPL--DE-GGNV---PRY--PSGNPL---RVGTDMRNHARVLFLDHRR--P---SIRGSILGRREFKLQDNFKQVYEQAMDLL-R------TEQVKQIEKTIAETLGGKDAMKSMEIGFGFADPANPFNSLLQYRE--------DELGLGIQSAIVVGIFEAFRQLGE-------KIGTVIIEEPEMYLHPQAQRYFYRLLCEMACQIIYSTHSPIFADVNRFEALRLVRKDRDRVVVSYVREEDKSVRNRFKLGGRFDTARNEV | |||||||||||||
4 | 6p74A | 0.15 | 0.12 | 0.81 | 0.87 | DisCoVER | M-LKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVWPSLRSRIPQDFIN----FDTTRAIEITVHFDP------------PYTQGSF------NITAFRLTCKGE-DADFHVDLEPLDEGGNVPRYPPL--RVGTMRNHARVLFLDHR--PS-I----R----------------GSI--LG------------RLLQPVRREFKLQDNFKYMEKAGKDAMKSMEIGFGFADPANPFNSLRLQYEGLGIQSAIVGIFE-AFRQLG----E---KIGTVIIEEPEMYLHPQAQRYFYRLLCEMQCQIIYSTHSPIFADVNRFEALRLVRKDDDRVVVSYVRKLRRFKLGGRFDTARNEVLFAK- | |||||||||||||
5 | 6p74A | 0.17 | 0.14 | 0.83 | 0.63 | MRFsearch | --LKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVWPSLRRIPQDFINFD-----TTRAIEITVHFDPPYTQGS---FNITAFRLTCKGEDADFHVDLEPLDE-----RNHARVLFLDHRRPSIRGSILGRLLQPVRREFK------------------------LQDNFKQVYEQAMDLLR-------TEQVKQIEKTIAETAKQMLGFLGK-----------DAMKSMEIGFGLRLQYREDELGLGIQSAIVVGIFEAFRQLGE-------KIGTVIIEEPEMYLHPQAQRYFYRLLCEMQCQIIYSTHSPIFADVNRFEALRLVRKDRDRVVVSYVREEDKNVRNRFKLGGRFDTARNEV | |||||||||||||
6 | 6p74A | 0.17 | 0.15 | 0.88 | 1.81 | SPARKS-K | -MLKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVWSLRSFIPQDFI-----NFDTTRAIEITVHFDPPYTQGS------------------FNITAFRLTCKGED-ADFHVDLEPLDEGGNVPRYPRVGTDMRNHARVLFLDHRRSIRGSILGRLLQPVRREFKLQDNFKQVYEQAMDLLR-------TEQVKQIEKTIAETAKQMLGFLGKMEIGFGFADPANPFNSLRLQYRED------ELGLGIQSAIVVGIFEAFRQLGEK-------IGTVIIEEPEMYLHPQAQRYFYRLLCEMQCQIIYSTHSPIFADVNRFEALRLVRKDDDRVVVSYVREEDKSDNVRNRFKLGGRFDTARN | |||||||||||||
7 | 3qktA | 0.14 | 0.11 | 0.81 | 0.82 | MAPalign | MKLERVTVKNFRSHSDTVVEFKGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK------VGARDTYIDLIFEK-----------------------DGTKYRITRRFLK--GYSSGEIHAMKRLEWKHVPSSAISAFMEKLFLNAIYIRQGKVVREVLNLDKFELSELKGGSGGTEELIEKVKKYKA---LAR-EAALSKIGELASEIFAEFTEGKYS----EVVVRAEENKVRLFVVWEGKE-RPLTFLSGGERIALGLAFRLAMSLY--------LAGSLLILDEPTPYLDEERRRKLITIMLKKIPQVILVSHDEELK-DA-ADHVIRISLENGSSKVEVVS----------------------- | |||||||||||||
8 | 5xeiA | 0.10 | 0.09 | 0.89 | 0.70 | CEthreader | PYIEKLELKGFKSYGNRKVVIKGFTAIVGANGSGKSNIGDAILFVLGGLSAMRATRISDLIFAGSKGEPPAKYAEVAIYFNNEDR--------------GFPIDEDEVVIKRRVYPDGR------SAYWLNGRRATRSEILDLLSAAMISPEGYNLVLQGDITKFIKMSPLERRQLKREKLEAEKESIIEFINEIEKEKKNVFMRTLEAIAKNFSELFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFIFAIQRFK--------PAPFYLFDEIDAHLDDANVKRVADLIKESSSQFIVITLRDVMMANAD--KIIGVSMRDGVSRVVSLSLEKAMKILEEAKK---------- | |||||||||||||
9 | 6p74A | 0.18 | 0.16 | 0.88 | 1.35 | MUSTER | -MLKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVWPSLSFRIQDFI-----NFDTTRAIEITVHFDPPYTQG------------------SFNITAFRLTCKGE-DADFHVDLEPLDEGGNVPRYPSVGTDMRNHARVLFLDHRR------PSIRGSILGRLLQPVRREFKLQDNFKQVYEQAMDLLRTEQVKQIEKTIAETAKQMLGFLGKDAMGFGFADPANPFNSLRLQYRED------ELGLGIQSAIVVGIFEAFRQLGEK-------IGTVIIEEPEMYLHPQAQRYFYRLLCEMQCQIIYSTHSPIFADVNRFEALRLVRKDDDRVVVSYVREEDKSALDNVRNRFKFDTARNEV | |||||||||||||
10 | 6p74A | 0.17 | 0.15 | 0.86 | 3.00 | HHsearch | -MLKRLQVKNFRCLEDIDLPLGPLTAIVGPNGAGKTTILRAIDLVLGDVWSLRSFRIQDFINFDT-----TRAIEITVHFDPPYTQGSFN-ITFRL--TCKGE-D----------------ADFHVDLEPLDEGGNVPRPLRVGTDMRNHARVLFLDHRRPS-----IRGSILGRVEFKLQDNFKQVYEQAMDLL-------RTEQVKQIEKTIAETLGGKDAMKSMEIGFGFADPANPFNSLLQYR---E-----DELGLGIQSAIVVGIFEAFRQLGE-------KIGTVIIEEPEMYLHPQAQRYFYRLLCEMQCQIIYSTHSPIFADVNRFEALRLVRKDRDRVVVSYVREEDKSVRNRFKLGGRFDTARNEV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |