>PF11394 (438 residues) AQSGGKFVLEVRGLGLVTGKETNEEIWKAIETKADNHSTYMSQNSADYPANEDERMTEVG LSTRISFKYGARHSVEYWPVPVFIWEPPKASHVSRPANELSGIRQEASLGVTLLLWQEDA NTNDGSTIIEKLFAFFDAHPDIPEAIIVTFDGAATRDLNQTPGYVDIFKQSNIPTMPDSM VTLLVSRSDRVDRLIRPYAVEQTENVDKNTTEYDITKLWNFFWEKNNGEGPGSFEAYYQE QQKAAGIQPRAFLGFMSAQWWQTQLPDFWKTISNKGPGEFKPTPYIPVRWTTWQVRQFDN APLLGYLHRPIDVKLADAHGKPLKTAQQAQALKAGWQQAVDTLPTGETPKRIFYDTTGDR AWVAPINQALAQSGPSAPSLDDVKEGYDIGRRIGNTGISSPLVQIGLGLIASYHEGGASA TIHRRPNGTATIVMVSPP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AQSGGKFVLEVRGLGLVTGKETNEEIWKAIETKADNHSTYMSQNSADYPANEDERMTEVGLSTRISFKYGARHSVEYWPVPVFIWEPPKASHVSRPANELSGIRQEASLGVTLLLWQEDANTNDGSTIIEKLFAFFDAHPDIPEAIIVTFDGAATRDLNQTPGYVDIFKQSNIPTMPDSMVTLLVSRSDRVDRLIRPYAVEQTENVDKNTTEYDITKLWNFFWEKNNGEGPGSFEAYYQEQQKAAGIQPRAFLGFMSAQWWQTQLPDFWKTISNKGPGEFKPTPYIPVRWTTWQVRQFDNAPLLGYLHRPIDVKLADAHGKPLKTAQQAQALKAGWQQAVDTLPTGETPKRIFYDTTGDRAWVAPINQALAQSGPSAPSLDDVKEGYDIGRRIGNTGISSPLVQIGLGLIASYHEGGASATIHRRPNGTATIVMVSPP | |||||||||||||||||||
1 | 4cw4A | 0.06 | 0.04 | 0.69 | 0.83 | DEthreader | -YFQSMSRLPVIVGFGGYNGRSSFHHGRRIPQARQETLAGLAVMMKLVKQTGFEPGELQVVAATDAIRSTGIDWKTINVEIAVFSGSSQLFLLGFNSMPTDFINAYVLGSVGMTGSIT-GACATFLYNLQKGIDVIT-SGQARVVIVGNSE---APILPECIE------------LAESSQYVVLMDD--E---L---------------------------------------------------------------------------------------------------ALRL-GADIHGAVTDVFINADG---FKK--P-PGNYLTVAKAVASAVQIVGDTVASFVHAHGSTNVTESEILDRVASAFGIDGW------PVTAVKAYV-GHSLTASADQLISALGTFKYPLEVCFINSKGFGGNNASGVVLSA | |||||||||||||
2 | 4h1gA | 0.06 | 0.04 | 0.64 | 0.67 | DEthreader | ---------------VIWIN-GDKGY---------------N-LAEVGKKFETIKVTVE-PDIIFWAHDRF--------GGYAQSGLL-----A-EITP-FQLPFTWDAVRYNGKLI------------------------AF---------------------------------------------DIKDVGVDNGAGLFLLHMTMTINLPTFPSKPF-VGV------------NYLLTDEGLEAVNKPLGAVA------MENAQKG------------EIMP-M-FWAVRTAVINAL---TNAGNIRVFCRINAP-IFERE--QSNDLVFEELSQLIQCSLDGTNV-CVFAYGQTGSGKTFTMSGMIPLSLIVGKFILNSHSIDLAGSERRLETQAINKSLSCLGVSLTYLKHSLTLMFVNISPLTSLFATKV-- | |||||||||||||
3 | 5yptA | 0.11 | 0.08 | 0.74 | 0.40 | HHpred | -HRRAAGPATVLAIGKATPPYSQSEYPDFFFDITSGINTRYFHCTEDIEPSLDVRQDIAIREVPRLAEKAAIEALAEWQITHVVFATTSGVNMPGADLTLTRLL---GLNPNVTMLYQQGC-FGGATVLRVAKDLAENNK-GARVLTVVSELTCVT--FRAPNEEHLDNLVGSAIFGDGASVLVIGSDPIPKPQFEIHWSGE------------------------TILPES--------------------D----------------------GA----------IEGR------LT---EAGL-----IFHL----LKDV-PGLISRNTLPIFNKAIEVAGS-PSWFWCVHPG--GRAILDEVAKTL------SLKPEKLEATRDILYNYGNMSGASVLFVLDQMRRRSAEGCEWGLVVGFGPGLTVEVSVLRAI | |||||||||||||
4 | 4jaoD | 0.07 | 0.05 | 0.69 | 0.41 | DisCoVER | --------SVIAGVFGALPPHRY-SQSEITDHAAAKVNGRHLVLYPSLTFANEIFIEKAVDLGVEALLGALDDALPSDIDMIATATVTGV--AVPSL--DARIAGRLGLRVRRMPLFGLGCVAGAA-GVARLRDYLRG-APDDVAVLVSVEL--CSLTYPAV-KPTVSSLVGTALFGDGAAAVVAVGDRRAEQ------------------------------------------------------------------------------------------VRAG----------------GPDILDSRSSLYSLHIMSPDLTNLIERYLANDVTTFLDAHRLTKDIGAWVSHPGGP-KVIDAVATS---LA-LPPEA--L-ELTWSLGIGNLSSASILHILRDTIEKRP-PSGSAGLMLAMGPGFCTELVLLRW- | |||||||||||||
5 | 5yo9A | 0.11 | 0.07 | 0.68 | 0.20 | MRFsearch | -----HMGIRITGTGLFHPTISNEELADSLNAYVEQRRYVIELDPTRLRPRLSERSNDELSIQAEWGVIAAKQAMENAGVDVVILACNMQRAYPAVAIEIQSAL---GIQGYAYDMNVA--ASAATFGLKQAADAIRSG--ARRVLLVNVEITSGH--------LDYRNRDCHFIFGDVATASIIEET-----------------------------------------------------------------------------------------------------------------EILDIHLFVVDDKLFRQDGRKV-FKDVCPLVAKIINAQLEKMQLTANDIKRFWLHQANANMNELILKYVAGK------DADLSRAPIILDEFANTSSAGVIIALHRT-GHEVDDGEYGVISSFGAGYSVGSIVVQK- | |||||||||||||
6 | 3gweA | 0.10 | 0.07 | 0.71 | 0.58 | SPARKS-K | --AAHPPRAAIADIAGHLQVLTNDVLAQLYP-----------------DWPAEKILAKTGETAADLAYEAARKLFAQGAVGVILCTQAPDYVLPTSACMLQHRLG-------IPTHAGALDVNLYVYGLSLAKGLVET-GAARCVLLLTADTYSKYLHPLD------KSVRTL--FGDGASATAVIAEHGELERIGPFVFGTDG----------------RGAPNLIVKAGLFREPKSADSAREHEDAS-----------------------------------------------------GNVRTDEHL----------YMNGAEVMAFSLAEVPRAADRLEPRENIDCFVLHQA-NRFMLDALRKKMK-IPEHKFPVL--------MEHCGNT--VSSTLPLALETMRALARGMRLMLLGFGVGYSWAGCLVNF- | |||||||||||||
7 | 4b7vA | 0.09 | 0.07 | 0.72 | 0.97 | MAPalign | -------RVVITGMGMLSPLGLDVPSSWEGILAGRSGIAPISAYSTRFGGSEARKLDLFIQYGLAASFQAVRDLVDANRIGVSMGSGGGLVPGSIINMVSGFLSIHLGLQGPNY-AL-TTACTTGTHSIGMAARNIAY-GEADVMVAGGSEAAGLGLGGFGAARALSPTRASGFVLSDGSGALVLEELEHA---------------------------------------------------------------------------------------------------------RARGARIYAELVGFGMSGDAFHMTAPP---EDGAGAARCMKNALRDAGLDPRVDYINAHGTSTPAGDIAEIAAVKSVFGEHAHA---LSMSSTKSMTGHLLGAAGAVEAIFSVLALRDKIDVALSNSFGFGGTNGTLVFRRF | |||||||||||||
8 | 4jaoD | 0.09 | 0.07 | 0.75 | 0.57 | CEthreader | ------SVIAGVFGALPPHRYSQSEITDSFVEFPGLKELVLPLQQYPSLTDFGDANEIFIEKAVDLGVEALLGALDDADIDMIATATVTGVAVPSLDARIAGRLGLRPDVRRMPLFGLGCVA--GAAGVARLRDYLRGAPDDVAVLVSVELCSLTYPAVKPTVSSLVGTAL----FGDGAAAVVAVGDRRAEQVRAGGPD--------------------ILDSRSSLYPDSLHIMGWDVGSHGLRLRLSPD-----------------------------------------------------------------------LTNLIERYLANDVTTFLDAHRLTKDDIGAWVSHPGGPKVIDAVATSLALPPEA------LELTWRSLGEIGNLSSASILHILRDTIEKRPPSGSAGLMLAMGPGFCTELVLLRWR | |||||||||||||
9 | 6s6yA | 0.13 | 0.11 | 0.89 | 0.46 | MUSTER | SERAPDQTIDATG-CVVM--IAGGNVVMSRLLLPDLY--------VSESAPNGHPFAHAGGSGSWIGANYARMGY------TAVEPALPPSNALATHLELADIPLLAVLGNDDHLLQLLRDGEGKQAVRDLVQQTLAHSRGL---GVCINAGGASAFKDGVLKLSLDDEIPCYGLSTRKIMSALL---DAVEEIGVPHPL-HCNNLGLPGADDSLVATLEAA-------GRRIHFAHAQFYAYGVVDPENPMTGGFRS--AAERINAAMEAHPNVGQVVFGQTVTISLD-ILRQFGGRKGAKAEGGGVVPFLYRPRG---------PVSSLQWAIGLELMLLS---SNPERTIHPNGGVFTEYPRIIHLLMDAEERAKEIATLPAIVGERSGLPIEREYSFSEIAQLTRSGPAKLLGLTDRGHLREGAKADVAIYRDD | |||||||||||||
10 | 2hdbA | 0.12 | 0.09 | 0.70 | 0.48 | HHsearch | ------MTIGIDKISFFVPPYYMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKE-----DKEAIDMVIVGTESSIDEKAAAVVLHRLMGIFARSFE--IKEGC---YGATAGLQLAKNHVALHPD-KKVLVVAADIAK--Y---GLN------SGGEPTQGAGAVAMLVASEPRILA------LKEDNV--M-LTQ---------------DIY-----------------------------------------------DFWRPTGH-------------------PY---PM-V-----DGPLS-NETYIQSFAQVWDEHKKRTGDFADYDALAFHIPYTKM-GKKALLAKISD---QTELARYEESIIYSRRVGNLYTGSLYLGLISLLENALTAGNQIGLFSYGSGAVAEFFTGEAG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |