>PF11359 (238 residues) VTSSTKVPTSTSNRNSVDNATSSGPTTGINMTTTHESSVHNVRNNEIMKVLAILFYIVTG TSIFSFIAVLVAVVYSSCCKHPGRFRFADEEAVNLLDDTDDSGGSSPFGSGSRRGSQIPA GFCSSSPYQRLETRDWDEEEEASAARERMKHDPENVIYFRKDGNLDTSFVNPNYGRGSPL TIESHLSDNEEDPIRYYVSVYDELTASEMEEPSNSTSWQIPKLMKVAMQPVSLRDPEY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | VTSSTKVPTSTSNRNSVDNATSSGPTTGINMTTTHESSVHNVRNNEIMKVLAILFYIVTGTSIFSFIAVLVAVVYSSCCKHPGRFRFADEEAVNLLDDTDDSGGSSPFGSGSRRGSQIPAGFCSSSPYQRLETRDWDEEEEASAARERMKHDPENVIYFRKDGNLDTSFVNPNYGRGSPLTIESHLSDNEEDPIRYYVSVYDELTASEMEEPSNSTSWQIPKLMKVAMQPVSLRDPEY | |||||||||||||||||||
1 | 6m39A3 | 0.05 | 0.02 | 0.43 | 0.71 | DisCoVER | -----------------------------------------------------------------------------M------SAC-------PERP--------------DSYCGSNSCPFKRAVFSNCIV-----------N---Y------TTWVNPDQRDFHLIFNP-FTECNLRIV---------DGCVPGFVLRVGRGYECFGWSWNDNQSIYDWWIADFVTGAFVCESN- | |||||||||||||
2 | 5xjjA | 0.08 | 0.06 | 0.71 | 0.83 | DEthreader | -VIAQYLVVMGHLSGVLATS--VTLHV-C---SNPAMTSSFA--ICEWWLFELLILCSPETSVLSICLTTETLHYVISSGVAGLWLESAFFSILLFTFRNI-IGYA-FSNSVVDYVADLSPLLCLSFILFAVGVARWQHIGAWNNI--F------SY---------YLVGAPVGVYL--------------------------AFRHDL--------N-GKGLWCVVSTATLA----- | |||||||||||||
3 | 1jhsA | 0.05 | 0.04 | 0.70 | 0.56 | CEthreader | -----------------------------------------------------------------------MNNKEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDWEALQEDTVQQGTKFTGLVMPDLAQTVVIGVALIRLTQFDTDVVISINVPLTKEEASQASNKELPARCHAVYQLLQEMVRKFHVVDT | |||||||||||||
4 | 5xevA | 0.11 | 0.10 | 0.91 | 0.60 | EigenThreader | STPQAALAATDLDGWLV-YDFQGLNTRRFFVWVPRAGRAGNWNRITLDAALRGVVSLERVRGALMRAKDDAFRLIHDRLRAGQSVTEWEVQQLIMDQIRAAGMQAGHDVSEQRSATLHPGEEPGRPFAVGFAGEPGQGWELDRAARDAMGELHRTGHDLGVQIHGAGANLDDYETRDLSVTVETYPAAG-GFGIRSEVDVYLAP-----------------DGPEVTTD---LQQAPF | |||||||||||||
5 | 6wvgA | 0.11 | 0.06 | 0.58 | 0.33 | HHpred | -------------------------------SDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNSQIDK--TSN-SHNVYI--T--ADKQKGIKANF--KIRHNVEDGSVQLADHYQQNTPI-G------DGPVL----LPDNHY-LSTQS---VLSKDPNEKRDHMVLLEFVT----AAGITHHH---------------------------------------- | |||||||||||||
6 | 6iiuA | 0.13 | 0.06 | 0.46 | 0.40 | MRFsearch | -----------------------------WCFLTLGAESGDVAFGLLFSMLGGLSVGLSFLLNTVSVATLCHVYHGMKKY-----------TCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEERDSEVEMMA---------------------------------------------------------------------------------------- | |||||||||||||
7 | 1y1yS | 0.08 | 0.05 | 0.68 | 0.48 | FFAS-3D | -------------------------NDGVDTAIYHHK----LRDQVLKALYDVLAKESEHPSILHTAKAIESEMNKVNNCDTNEAAY-KARYRIIYSNVISKNNPDLKHKIANG--DITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGA------TIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCT--------------------------------------- | |||||||||||||
8 | 3l6wA | 0.08 | 0.08 | 0.98 | 0.68 | SPARKS-K | ADSGNNNPFFKYHIRSINQDTVRDVNEAIFFSSIFYLALQALEEDNYCDFEVQYEILHNEVHALIMSTLEYSIIWQELQKRRVKSCAGDHVPLHPFNYESVNN--DDFTRENSLPNAVVDSHRFNYKYDNLNLHGHNIEELEEVLRSLRLKS--RVFAGFVLSGIRTTYIKSGTDSDSFVILGGAKEMPWAYERLYRFDITETVHNLNLTTELDASVLPAPIIVRRPDIIEIPIGKDV | |||||||||||||
9 | 3v0cA | 0.12 | 0.08 | 0.63 | 0.54 | CNFpred | --------------------------------------LSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLEDFDA---SLKDALLKYIYD----NRGTLIGQVDRLKDKVNNTLSTDIPFQLSK---VDNQRLLSTFTEYIKNINTSILNLRYE---SNHLIDL-SRYASKINIGSKVNFDPIDKNQIQLFNL------------------------------------- | |||||||||||||
10 | 4d8mA | 0.05 | 0.03 | 0.70 | 0.83 | DEthreader | ----------------------------------K-DQQLFNAIMDAVNKMVDNKFLSYNLSTLNKTIEGLQGNLGLFQNAIVRVASRFDTANSFLHLLYSTVCLIAATWPT--DTHNYH-GGKL--LTR----LDT--YSRKELTNVPELVNKGFPFEYIQSVGIQITN-T--KYEIRCRYAS--------KGDNNVYFNV-DL-------------S-ENPFRNSISFGSTESSGK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |