>PF11306 (234 residues) TCFLSQAQKKDAAFETGEWFKFRIHYGFINASYATLEVKDDYLNGKSVYHVVGKGKTTGF ASIFFKVDDNYESYFDKNSGKPYKFIRQIDEGGHTKDIEIDFNHEKEKALVNNKKHKTKE EINIEKNVQDMVSAFYYLRNNYDVSSIKEGDEVVLNMFFDKENFKFKLKFLGRETMRTKF GKVPCLKFRPYVQAGRVFKESESLTLWVSDDENKIPIRIKAKLVVGSLKADLDA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TCFLSQAQKKDAAFETGEWFKFRIHYGFINASYATLEVKDDYLNGKSVYHVVGKGKTTGFASIFFKVDDNYESYFDKNSGKPYKFIRQIDEGGHTKDIEIDFNHEKEKALVNNKKHKTKEEINIEKNVQDMVSAFYYLRNNYDVSSIKEGDEVVLNMFFDKENFKFKLKFLGRETMRTKFGKVPCLKFRPYVQAGRVFKESESLTLWVSDDENKIPIRIKAKLVVGSLKADLDA | |||||||||||||||||||
1 | 5uc2A | 0.08 | 0.07 | 0.88 | 1.17 | DEthreader | --------A-VRLVP--HRAIYDLTLRAGLTGR-VYEFNGSA---CEGYTTNFRFVTRVDDQPQRVTDQQTTTFEDADG-KDFRFVNKTFVDKELKEVRGDAKLEDTVVKLSKP---KENTLDLKGTQF---P--TRHEELIGKAEAGQKFYQTTLFDSDDRVVATTVVVGKQQAVPDDTKKDQVWPVTIAYFDDKEQQGPYRINFKLY--RNGITRDLTD-YGDFS-RGKLVL | |||||||||||||
2 | 5uc2A | 0.09 | 0.08 | 0.87 | 1.17 | DEthreader | ---------AVRLVP--HRAIYDLTLDRGLTGR-VYEFNGS----CEGYTTNFRFVTRVDDQPQRVTDQQTTTFEDADG-KDFRFVNKTFVDKELKEVRGDAKLEKTVVKLSK---PKENTLDLKGTQF---P--TRHEELIGAEAGQ--KFYQTTLFSDDRVVATTVVVGKQQAVPDDKSKDQVWPVTIAYFDDKEQQDGPYRINFKLY-RNGITRDLTD-YGDFS-RGKLVL | |||||||||||||
3 | 6ntrA | 0.11 | 0.09 | 0.85 | 0.40 | HHpred | -----------AVRLVPHRAIYDLTLDRALTGR-VYEFNSAC----EGYTTNFRFRVDDEQ-PQRVTDQQTTT-FEDADGKDFRFVNKTFVDKELVRGDAKLEDGKTVVKLSK---PKENTLDLKG-TQFPTRH-EELIG-----KAEAGKFYQTTLFDASERVATTVVV-GKQQAVPKFSKDQVWPVTIAYFDDKQDGPIYRINFKLYRNG--ITRD----TDYGDFSGKLV- | |||||||||||||
4 | 4fvsA | 0.08 | 0.06 | 0.80 | 1.00 | DisCoVER | QDCTFFF-----PQTEGTVWVRKGYDAGNLQSVSYQVDEVE-TLPSGQEVEADYVYTN--PSGTIVNKGDIKAYCQNGEFFLDSKELVVSNT----NVDITE-------------------------NFI--N------YPN-PYAFDKVYFDEASVKIYNRKDAIKREFIKTESITTPAGTFDCAKVKYNIATRSPKETITGYGYEWYSPNVGLVRTEQYDKNVLQSYTVLE- | |||||||||||||
5 | 4fvsA | 0.13 | 0.09 | 0.68 | 0.77 | MRFsearch | ----------------------------------------------TVWVRKGYDA----KGNLQSVSYQVDEVETLPSGQEVEADYVYTNPTIVNKGDIKAYCQNGEFFLDSKEENTNVDITE------------------------DEASVKIYDKKNRKDAIKDREFIKTESITTPAGTFDCAKVKYNIATRSKETITGYGYEWYSPN--VGLVRTEQYDKVLQSYTVLEE | |||||||||||||
6 | 4fvsA | 0.14 | 0.12 | 0.81 | 1.04 | SPARKS-K | -----QDCTFFFPQTEGTVWVRKGYDAKGNLQSVSYQVDEVETLP-SGQEVEADYVYTN------------------------------PSGTIVNKGDIKAYCQNGEFFLDPGVVSENTNVDITENF-------INYPNPYAANFDKNNVEASVKIYDKKNRKNRKREFIKTESITTPAGTFDCAKVKYNIAPKSKETITGYGYEWYSPN--VGLVRTEQYDKNNQSYTVLEE | |||||||||||||
7 | 5uc2A | 0.10 | 0.09 | 0.88 | 1.26 | MAPalign | ------------VRLVPHRAIYDLTLDISGLTGRVYEFNGSA---CEGYTTNFRFVTRVDDQPQRVTDQQTTTFEDA-DGKDFRFVNKTFVDKELKEVRGDAKLEDGKTVVKLKPKENTLDLKG---TQFPTRH-EELIG-----KAEGQKFYQTTLFDADRVVATTVVVGKQQAETKVFSKDQVWPVTIAYFDDKEQGPIYRINFKLYRN--GITRDLTDYG--DFSRGKLVK | |||||||||||||
8 | 5uc2A | 0.11 | 0.10 | 0.94 | 1.02 | CEthreader | -------AVRLVPHRAIYDLTLDRADEKSGISGLTGRVYEFNGSACEGYTTNFRFVTRVDDEQPQRVTDQQTTTFEDADGKDFRFVNKTFVDKLVKEVRGDAKLEDGKTVVKLSKPKENTLDLKGTQFPTRHEELIGKAEA-------GQKFYQTTLFDADRVVATTVVVGKQQAVPDDETKVGVWPVTIAYFDDKEQQDGPIYRINFKLYRNGITRDLTDYGDFSRGKLVKLD | |||||||||||||
9 | 4fvsA | 0.13 | 0.11 | 0.83 | 0.73 | MUSTER | -----QDCTFFFPQTEGTVWVRKGYDAGNLQSVSYQVDEVETLPSGQEVEADYVYTNP-----------------SGTIVNKGDIKAYCQNG------EFFLDS--KETLSYPGVVSENTNVDITEN-------FINYPNPYAANFDKNNVYASVKIYDKKKDAIKDREFIKTESITTPAGTFDCAKVKYNIAPKSKETITGYGYEWYSP--NVGLVRTEQYDKNNVLQSYTVE | |||||||||||||
10 | 5uc2A | 0.10 | 0.09 | 0.86 | 0.90 | HHsearch | ----------AVR-LVPHRAIYDLTLDRALTGR-VYEFNGS---ACEGYTTNFRFVTRVDDEQQRVTDQQTTTF-EDADGKDFRFVNKTFVDKELKEVRGDLEDGKTVVKLSKP---KENTLDLKG-TQFPTRH-EELIG-----KAEAGKFYQTTLFDADRVVATTV-VVGKQQAVPKFSKDQVWPVTIAYFDDQQDGPIYRINFKLYRNG--ITRDLT-DYGF-S-RGKLVK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |