>PF11289 (273 residues) MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSAT KIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINA CRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIPYNSVTDTIVVTEGDGISTPKL KEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDP PNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSATKIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINACRIIMRCWLCWKCKSKNPLLYDANYFVCWHTHNYDYCIPYNSVTDTIVVTEGDGISTPKLKEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDPPNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVP | |||||||||||||||||||
1 | 6xdcA | 0.76 | 0.54 | 0.71 | 10.59 | HHpred | ---------------------------------------SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGE------HDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD----------------------------------- | |||||||||||||
2 | 6xdcA | 0.77 | 0.54 | 0.70 | 1.90 | MRFsearch | ---------------------------------------SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGE------HDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIV------------------------------------ | |||||||||||||
3 | 6xdcA | 0.76 | 0.54 | 0.71 | 3.24 | FFAS-3D | ---------------------------------------SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDG------EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD----------------------------------- | |||||||||||||
4 | 6xdcA | 0.76 | 0.54 | 0.71 | 2.29 | SPARKS-K | ---------------------------------------SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDG------EHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD----------------------------------- | |||||||||||||
5 | 4divA2 | 0.05 | 0.02 | 0.37 | 0.58 | DisCoVER | ---------------------------------------------------------------------------------------------------------------------------IVNEKVPAGF------K----FVLEHDSEYQP--------EVKVTSYKNAIGTET--DGFDSGPVFG------GGTIYNVPVSLSYD----------RQKVYVEMPKSYTLLLVIKETQVLCFKMSDAKITKGY----VFV--------- | |||||||||||||
6 | 2ok5A | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | PQTQAIHCPRPHYWPREISFHCYDG-YTLRGSANRTC---QVNGR-WS-GQT-AI-------CS-NP-GI--PI-GTRKHCSRGL--T----LRGSQRRTCSWSGTEPS--CQDSFMYD-TPQEVAEAFLSSLTE-TIK--------RKIVLGSM---------YLVL--------FTGAKKLLIKVA--KPRYGLVTLMTD----EDLDVYVFG----LAS--KKDNEQHVFKVKD-MENEDVFYQM----IDESQSLVWHRKG--G----- | |||||||||||||
7 | 5oqlA | 0.08 | 0.08 | 1.00 | 0.56 | CEthreader | RCAAYHAESNLLVAGFSNGIFGLYEMPDFNLIHTLSISQNEIDFVTINKSGEWLAFGASKLGQLLVWEWQSESYILKQQGHFDAMNSLVYSPDGQRIVTAADDGKIKVWDVESGFCIVTFTEHTSGVTACAKKGSVLFTASLDGSVRAWDLRLSFTCMAVDPSGEVIAAGSIDSFDIHIWSVQTGQLLDRLSGHEGPVSSLAFAPDGSVLVSGSWDRTARISEPLQLQSDVLDVAFRPDSKQIAISTLDGQLTFWSVSEAQQVSGVDGRRDVS | |||||||||||||
8 | 4rxhB | 0.08 | 0.07 | 0.87 | 0.62 | EigenThreader | ATTKFRKLLSKERNPPIEEVIKTGVVGRFV----EFLRSPHTLVQFEAAWALTNIATQTQVVIEAVPIFVELLDVREQAVWALGNIAGDSPQCRDYVLSCG----ALRPLLTLLGDSSMLRNATWTLSNFCRIAPALPVLAKLVYSDACWAISYLS-------DGS----------NDKIQAVIEAGIPRRLVELLIVTGD-----------DVQTQVIINCGALPCLLSLLSSNKDGIRKEACWTISNITAGNADLKTRKEACWAISNATSG | |||||||||||||
9 | 1m8oB | 0.25 | 0.02 | 0.09 | 0.27 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RARAKWDTANNPLYKEATSTFTNI | |||||||||||||
10 | 7jg5a | 0.14 | 0.04 | 0.29 | 0.37 | MRFsearch | -------------------------------------------VAFLAPINIVEELAK---PISLALRLFGNIFAGGILVALIAMFPWYIQWFPNAVWKTFDLFVGLIQAFIFSLLTILYFSQSME--------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |