>PF11271 (313 residues) LACILVGLGAFLLAVAILIPTYTVGKLEKTPLDLEVTTIAEGSGSVLNSQALLAGKAEVN TNVPLVSQRYVTTEDPANADVVTLQAGQTLRRTDKQGDTGLLSAIVDRNTVDRKTSMPTN DPVGTIQTQPNQPAEEVPRDGLQYKFPFNSEKQSYPYFDLNARATQDIDFVEETEINGLK VYHYNQTIEPVDLSKVVSSPTNKLTLPAEAWGVPGGTLPVTMTRWYTNVRDLWVEPETGV VVKGQEQLHQYYARNKDKPEIDVLKVELPFNEQTIEYQVQQAKDGMDKLSTFGRTVPIIA GILGVIALIAGLV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LACILVGLGAFLLAVAILIPTYTVGKLEKTPLDLEVTTIAEGSGSVLNSQALLAGKAEVNTNVPLVSQRYVTTEDPANADVVTLQAGQTLRRTDKQGDTGLLSAIVDRNTVDRKTSMPTNDPVGTIQTQPNQPAEEVPRDGLQYKFPFNSEKQSYPYFDLNARATQDIDFVEETEINGLKVYHYNQTIEPVDLSKVVSSPTNKLTLPAEAWGVPGGTLPVTMTRWYTNVRDLWVEPETGVVVKGQEQLHQYYARNKDKPEIDVLKVELPFNEQTIEYQVQQAKDGMDKLSTFGRTVPIIAGILGVIALIAGLV | |||||||||||||||||||
1 | 4f7bA | 0.08 | 0.06 | 0.79 | 1.00 | DisCoVER | ------------------------EKKIVLRWEKPPLPVYTQFYFFNVTNPILRGTPRVEEVGYTYRELRNKAIQFGDGTTISAVSNKAYVFSVGDPKYEKNGTNDGDYVFLTGFTKIVEWNGTSLD---WWITKCNMINGTDGSFHPLITKEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAE-ILANTNAGFCISGVLN---VSICK---NGAPIIMSFPHETFVDINPLTGIILKAAKRFQINIYVKDIRTMVFPVMYLNESV--HI--DKETASRLK--------------------------- | |||||||||||||
2 | 5fp1A | 0.10 | 0.07 | 0.66 | 0.67 | DEthreader | ----KFVAPLDTPKSVSVIS--IVTTLADA-----RTVILGRSESSMY---I------R---S-S------------------VEQVEVTKGSASGSVGGSINMISKEGSVAAGYQRITLD-GN----------AARVAVLGHQNEKAGSNGEYKRVGIASYYYLQTDDKPDSGIVKQTYYGDFQKQEN-HIGT---------IKLEH------NITITNTAMYAKSKNDYVWTNPD-----NSAITDSETFTDQLAEYSKQSLNWGD---INNLSDK-RYFT-KA--------------------------- | |||||||||||||
3 | 4f7bA | 0.06 | 0.06 | 0.91 | 0.85 | CEthreader | TTISAVSNKAYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQKLFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFETFVDINPLTGIILKAAKRFQINIYVKKLDRTMVFPVMYLNESVHIDKETASRLKSMI--------------------------- | |||||||||||||
4 | 4f7bA | 0.10 | 0.07 | 0.77 | 0.95 | EigenThreader | -------------------------IEKKIVLRPLPVYTQFYFFNVTNPEEILRGE----TPRVYTYRELRQFGDNG--TTISAVSNKAYVFERDQSVGDLIRTLNYVFLTGEDSYLNFT--KIVWNGKTSLDWINGTDGDS----FHPLITKDEVLYVFPFCRSVYITFSDYESVQGLPAFRYKVPLANTNAGFCIPEGNCLVLNV-----SICKNGAPIIMSFPHFYTFVDINPLTGIILKAAKRFQINYVKKGDIRTMVFPVMYLNIDKETASRLKSMI------------------------------- | |||||||||||||
5 | 4f7bA | 0.13 | 0.10 | 0.76 | 0.62 | HHpred | --IPVLTV--IEWSQVHFLREIIEAMLKAYQQKLFV-THTVDLWGYKDEI-LSL-IHVFR---PDISPYFGLFYNGTNDGDYV------FLTGED--SYLNFT---KIVEWNGKTSLDWDKCN-MING----------TDG--DSFHPLITKEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDLGGAPIIMSFPHFYEGMHP--N-QED---H--ETFVDINPLTGIILKAAKRFQINIYVKKLTMVFPVMNESVHIDKETASRLKSM-------------------------------- | |||||||||||||
6 | 4f7bA | 0.13 | 0.09 | 0.73 | 0.75 | MRFsearch | -----------------------FDSWEKPPLPVYTQFYFF---NVTNPEEILRGTPRVEEVGPYTYRELRNKANIQNGTTISAVSNKAYVFERDQSVKLFVTHTVDEYVFLTGE-------------------DSYLNFTKIVEWNLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPA------EILALGSGVLNVSICKNG---APIIMSFPHFYQAETFVDINPLTGIILKAAKRFQINIYVKTMVFPVMYLNESVHIDKETASRLKSM-------------------------------- | |||||||||||||
7 | 4f7bA | 0.13 | 0.10 | 0.79 | 0.66 | FFAS-3D | ----------------------AFDSWEKPPLPVYTQFYF---FNVTNPEEILRGETPRVEEVPYTYREKANIQFGDNGTTISAVSNKAYVFERDQSQQKLFVTHTYVFLTGEDSYLNFNGKTSLDWWITDKCNMINGTDGDSFH-PLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVNCLGSGVLNVSICKNGAPIIERFVSAIEGMHPNQEDHETF-----VDINPLTGIILKAAKRFQINIYVKKLDRTMVFLNESVHIDKETASRLK---------------------------------- | |||||||||||||
8 | 6vnoA | 0.08 | 0.08 | 0.93 | 0.83 | SPARKS-K | QERPTSAQVFDILNSAELVCLTRLPKNVIVECMVATSIWLHTDRGQLSFLDLNTEGYTSEEDSRILCLALVHLP---VEKESWIVSGTLVINTEDGKKTDSVTCLYCFLLVGTADGKLFEDKTVKLKGAAPLKILNIGNVSTPLMCLSESNV----MWGGCGTKIFSFDFTIQKLIETITVVVLYIAKQNSPVVEDKKTEKLCGLIDVHFLREVMMSYSGRVKTLCLQNTALWIGTGGGHILFCNSVRVMMTAQLGSLKNVMLVLGYWDIN---LPHEVQNLEKHIEVRKELAEKMRRTS------------- | |||||||||||||
9 | 6ekvA | 0.09 | 0.06 | 0.72 | 0.85 | CNFpred | --------SEDKDFLSLAFRNWFNDNIQQFE---QIFAYILLDETAKIP-EYQW--------LKPTQISYGSASVETDLDASIFSAMSMVENNTNSTPSHAVDN-QAAFGISFP-LSSQFISVDDIVAD---------INTLTITNN-----KQIIFGKVE-GKNVDSSLKLKLSLQNNLIVLELFDL--------------TWEQGR----------GVTGHFDFRQEYELTLE-------SKSEKQIPILKV------HDEPEIEYYVEEAQWKANE-------------DMIVSAVVGTVFSMILGAGMK | |||||||||||||
10 | 5lgdA | 0.13 | 0.10 | 0.73 | 1.00 | DEthreader | --------------------QKTIKKQVVLAFKNKTTEVYRQFWIFDV--PQ--MMIVKQRGPYTYRVRLAKEVTQDAENTVSFLQPNGAIFPGTEADLRLWFYTADGYKVFNGKVIIDTYKGKR-----------DMINGTDASFPPFVEKQVLQFFSSDICRSIYAVFESDVNLKGIPVYRFVLPAFVLDISKCKE-G--R-------------------PVYISLRTYLDIEPITGFTLQFAKRLQVNLLVKPRNYIVPILWLNETGT--IGDEKANMFRSQV--------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |