>PF11231 (255 residues) TGGVSQLEGAAGGGLTPWAVIGGYGTRDEIGANAFYTRVNLPDYHVDTAGAMVGLYNRVE LSFARQRFDTEKVGAALGLGEGFTFRQDVVGVKVRLFGDVVLDQGSWLPQVSVGAQYKKN DQDGVVRFVGAKRSQGTDYYISATKLFLGQSLLVDGTVRFTKANQIGILGFGGDLNNSYK PEFEASVAYLLSRHWAIGAEYRQKPNNLGIAREDDWYDAFVAWAPSKHVSLTVAYADLGN IVIKDRQRGLYASVQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | TGGVSQLEGAAGGGLTPWAVIGGYGTRDEIGANAFYTRVNLPDYHVDTAGAMVGLYNRVELSFARQRFDTEKVGAALGLGEGFTFRQDVVGVKVRLFGDVVLDQGSWLPQVSVGAQYKKNDQDGVVRFVGAKRSQGTDYYISATKLFLGQSLLVDGTVRFTKANQIGILGFGGDLNNSYKPEFEASVAYLLSRHWAIGAEYRQKPNNLGIAREDDWYDAFVAWAPSKHVSLTVAYADLGNIVIKDRQRGLYASVQ | |||||||||||||||||||
1 | 4rl8A | 0.07 | 0.06 | 0.85 | 1.17 | DEthreader | --------EV-DP---GDYEA--LP-V-GATIGVVYYQHSTKLTSNVGILRLLHVYQTLEQFLLPFGRVSSSDASAL--G-DTSGVGDLTLTAPLKYR-LN-E--A-NDILGATVYLTPGNYNRDDALN-GENRWKVDLQAAYVKHLGEK-WAVDLVGDAIWY---------RREQD-VSYGAQLMGRYIVDPGTSLAIGLGHTWGENQDRAETTNFRVTANKFFTAKDQLQMQLGRDAVNGP-KENFRLNLRYV | |||||||||||||
2 | 4rl8A | 0.07 | 0.06 | 0.87 | 1.17 | DEthreader | -----------E--VDPGDYEALPV---G-ATIGVVYYQHSTTSNVGILRLLHVYQLTLEPQFLLPFGRVSSS-DASALGDTSGVGDLTLTAPLK-YRL-N----EANDILGATVYLTAPGNYNRDDALNGENRWKVDLQAAYVKHLG-EKWAVDLVGDAIWYS--------RREQD-VSYGAQLMGRYIVDPGTSLAIGLGHTWGENDDRAETTNFRVTANKFFTAKDQLQMQLGRDLVENGPKENFRLNLRYV | |||||||||||||
3 | 4meeA | 0.08 | 0.07 | 0.84 | 1.17 | DEthreader | ------SLFLMD----LNERK--Q------SVWMRITGGRSSTTNQFINQLGGDIYKTLGIMGGYANAKGKTINYS-KAAR-NTLDGYSVGVYGTWYQNG-EN--ATGLFAETWMQYNWFNASV-------YNLNGLTASAGGGYNLNHFWLQPHLQAVWMGVT-------QGAG-K-NNIQTKAGIRASWKVSPYIEANWIHNTHEFGLSGSRNQGEIKTGIEGVQLSVNGGVAYQAGG---HGSNAISGALGI | |||||||||||||
4 | 2r4nA | 0.08 | 0.07 | 0.88 | 1.17 | DEthreader | -----NEFSSSGGRAYEGIADAIMFD--R-PTFSAGAVYIDPPTAWVPNMHFVAPDQFGWGASITSYGLATEFNDGVGGT--TDLETMNNNAGILYELDKN-------NRYALTYRSEVKIDFG-------TLNLPEMWEVSGYNRVDP-QWAIHYSLAYTSWS-----QFQQEGFK-DAYRIALGTTYYYDDNWTFRTGIAFDDSPVRPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQVSEGKAWLFGTNFN | |||||||||||||
5 | 3aehA | 0.09 | 0.07 | 0.85 | 1.17 | DEthreader | -------FITEVDNLNKRMGDLRINGE-A-GTWVRLLNGSGSTDHYTLLQMGADRKHFTGVMATYTDTDA-SA--DLYS---GKTKSWGGGFYAS--G-LF-R---SGAYFDVIAKYIHNENKYDLAG-QNFRSHSLYAGAEVGYRYHLTFVEPQAELVWGRL-------QG-QNSV-NPLVGRTGVVSGKTFTARAGLHYEFDLTDSR--KDSRMLYGVGLNARFGTRLGLEVERSAGKY----NTDDAINANI | |||||||||||||
6 | 5o65A | 0.12 | 0.10 | 0.89 | 0.52 | HHpred | --------------YNEAS---GFFGNGKFSFETGITYARYDDNWTLDLTGRYNLDNRWQFDVNVPVVYRESTYQEESVSRDPTI-GDNFGIAYKFLDESA------TPDAVVSVRVKAPTGKE-PFGISLPGNGVWSITPGLSKTFDPAVLFGSVSYTHNLEDSFDDISSVNKVRLGDSFQFGVGVAFALNERSSFSVSDLIQRKKLGSDANAGYFNVG-TIAASENLTIVPNLAI-G-TDDAP-DFTFSLKFP | |||||||||||||
7 | 4rl8A | 0.08 | 0.07 | 0.89 | 0.70 | DisCoVER | --------------PGDY-EAL--P-VGATIGVVYYQHSTTDLTSNVGILRLLHVYTLEPQFLLPFGRVSSSGD-ASALG-DTSGVGDLTLTAPL---KYRLN-EANDILGATVYLTAPTGNYNRDDALNLGENRWKVDLQAAYVKHLGEKWAVDLVGDAIWYSDNDDFGRREQD---VSYGAQLMGRYIVDPGTSLAIGLGHTGGENQIDAETTNFRVTANKFFTAKDQLQMQLGRDLAVGPK-ENFRLNLRY- | |||||||||||||
8 | 5o65A | 0.11 | 0.09 | 0.83 | 0.53 | MRFsearch | ----------------------------KFSFETGITYARYADNWTLDLTGRYNLDNRWQFDVVYRESTYQEESVSR----DPTIGDVNFGIAYKFLDES------ATPDAVVSVRVKAPTGGIKLVYVPESGNGVWSITPGLSVKTFPAVLFGSVSYTHNEDSFDDISSDVNQKVLGDSFQFGVGVAFALNERSSFSVSDLIQWQSIVSSDANAGYFNVGTIAASENLTIVPNLAIG-----TDDAPDFTFSLK | |||||||||||||
9 | 3a71A | 0.10 | 0.09 | 0.91 | 0.81 | SPARKS-K | ------------PTSLTNVTIFSPPSDYIVPRTLYPRNEQLPNGDLLATWENYSPEPAVYFPIYRSKDHGKTISRHDTVNGYGLRYQPFLYSTLLLAGSSIPTDLSS---TDIVLYASQDDGMTIAAGGEARPNNGLTPVWEPFLLANKGKLICYYSDQRDNATYGQTMVHQVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPENISSPYAVWTPYGNGTIIVSSG---------TQGTLFINKA | |||||||||||||
10 | 1uynX | 0.11 | 0.11 | 0.93 | 0.95 | MAPalign | VYADSTAAHADMQGRRLKAVSGLDHNGTGLRVIAQTQQDGGGKMRGSTQTVGIAAKTTAAATLGMGRSTWSENS--A----NAKTDSISLFAGIRH-D------AGDIGYLKGLFSYGRYKN-SISRSTAGSNGTLMQLGALGGVNVPTGDLTVEGGLRYDLAEKGSALGWSGNSLTEGTLVLAGLKSQPLSDKAVLFATAGVERTVTGPH-TRLVAGLGADVEFGNGWNGLARYSYAGSKQY--GNHSGRVGVG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |