>PF11209 (208 residues) VLDRVAARVVADQIATRAQNAENLAERPDVSLGGFPFLTQVVAGRYRDVELEVHGYEQDG TRVDRVHADLTGVRLPLSDVLRGEVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKVSPA GQGIQIGGTVDLLGTPYPVSGTADIGVAPDAVTFTPRELAPDLEALIPPGLLDTVRSLLT VRVPVAGLPFNMKLRSATVRADRLTFAA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VLDRVAARVVADQIATRAQNAENLAERPDVSLGGFPFLTQVVAGRYRDVELEVHGYEQDGTRVDRVHADLTGVRLPLSDVLRGEVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKVSPAGQGIQIGGTVDLLGTPYPVSGTADIGVAPDAVTFTPRELAPDLEALIPPGLLDTVRSLLTVRVPVAGLPFNMKLRSATVRADRLTFAA | |||||||||||||||||||
1 | 3l6iB | 0.09 | 0.06 | 0.64 | 0.71 | DisCoVER | ------------QLTQYT--ITEQINLANFSKDIG---LPG-VADAHIVLTNLTSQIGRPNKVTLTGDANLDNSL------------FGSQKAT-------------------------------------------KLKLKALPVFDKGAIFLKEEVVDATVVQTLLPYLNQALRNYFNPAYVLRGEAAKKLAKGIEVKPGEIVIP- | |||||||||||||
2 | 1bp1A | 0.11 | 0.09 | 0.81 | 0.83 | DEthreader | TNSSSKLQPYFQT-LPVMTKIGINYGLVAPPAT--------------ETLDVQMKGEFYSPAPPVM------------------------DRMVYLGLSD-YFFNTAGLQESTPPHLSVQPTGLTFYPAVDVQLIGMHTTGSMEVSAESNRLVGELKLDRLLLQDNVPILVLPRVNEKLQKGFPLTPARVQLYNVVLQPHQNFLLFGA | |||||||||||||
3 | 5ixmA2 | 0.05 | 0.04 | 0.83 | 0.79 | CEthreader | -----------------------------LDMNYYK--NDVGPFDMHVYGQAAKFTSVNPTNPEASRFHIEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNPKLKVLPQFKVDGKVVFDRSMDWATGFTQTLEPRAQYLYSANQVSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTGNTENATGSLVWAGDTF----- | |||||||||||||
4 | 1pzdA | 0.09 | 0.06 | 0.69 | 0.70 | EigenThreader | TRQEIFQEQLAA----------VSETEYVIRCTT---------DHMVFQFDCTNTLND---QTLENVTVQMEPSLPK--EDPTAVACTFSCVMKFTVKDCVGNIVKFLG---MHPCERSDKNTHLLLAGVFRGG--HDILVRSRLLLL-DTVTMQVTARSSE------ELPVDIVLASVG---------------------------- | |||||||||||||
5 | 3l6iB | 0.12 | 0.07 | 0.54 | 0.33 | HHpred | ---------------------------------------------------------------------------------------------LTQYTITEQEINQSLAKHGVHSQIGREPNKVTLTGDANLFGAT-KLKLKALPVFDKGAIFLKE-EVVVQPKQTVQPYLNQALRNYFQPAYVLREDGAKKLAKGIEVKPGEIVIPF | |||||||||||||
6 | 1y0gA | 0.15 | 0.09 | 0.63 | 0.50 | MRFsearch | ---------------------------------------------HAFVNFRIQHLSWLYGTFKDFDGTFTFDE-----------KNPAADKVNVTINTTSVERDKHLRSPQATFSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGKRAGFEAEGKIKLKD--------------FNIKTDLGPASQEVDLISVEGVQ------- | |||||||||||||
7 | 1bp1A1 | 0.10 | 0.09 | 0.84 | 0.71 | FFAS-3D | ISQKGL-DYASQQGTAALQK-------------------ELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKIS------------GKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSVHVHISKSKVGWLIQLFHKKIESALRFQTLPVMTKIAPPATTAETLDVQ- | |||||||||||||
8 | 6vs7A | 0.10 | 0.09 | 0.92 | 0.60 | SPARKS-K | QNANSLTQTDKDAVIAAVKSAPNLPATSTYSVSE--------NGT---VTITYPDGSTDTIAAAQTVDTDR--VAPVFVDEGRDYIFYRGEEGTAELHFYDLAASSTYNTLGFTFNTATEQNPLVTTIRGTPKSLKYTFKVRATDTSEAKIFRIVFALTGVLNPQQLSTSEKTAIEEKVRAANT-GNLPNNVQ---YVVNNDGVTVIY | |||||||||||||
9 | 1bp1A | 0.08 | 0.05 | 0.69 | 0.99 | CNFpred | --LDYASQQGTAALQKELKRIKIPDYSDSFKIK-----------HLGKGHYSFYSMDIREFQLPSSQISMVPN----------VGLKFSISNANIKISGK--------------WKAQK--RFLKMSGNFDLSIEGMSISADLKLGSNPGKPTITCSSCSSHINS-KVGWLIQLFHKKIESAL------------------------- | |||||||||||||
10 | 2obdA | 0.05 | 0.04 | 0.83 | 1.00 | DEthreader | --VAKSINTQLTARVRNADFQTADISLTDPVITA------------SYLESHHKGHFIYKSE-LPFP-LGDS------------------RMLYFWFSERFHSLAKVAFQGCLKMPKISQNKGVVDSSVMVKFLYTFEEDIVTTVQASYSLFLSLDFQITPKTVQSLQSMITAVGIPEVMLEFTMNVSFDIINPEIITRD--GFLLLQ | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |