Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VLIGAGATVVMDIWALFLKRCFGIPSLNYAMVGRWLGHIPQGQFCHQSIMQAPPVKGETAFGWFAHYLIGILFAGLFLFISDPDWVNNPTFLPALLMGIVTVVAPFFIMQPGMGFGVAASKTPAPNTARVRSLMTHTIFGVGLYLSALL |
1 | 3rkoB | 0.10 | 0.09 | 0.91 | 1.01 | CNFpred | | LLGGAVGKSAQLPLQTWLADAMAGP-TPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-------DIKRVLAYSTMSQIGYMFLALGVQAWDAAI------FHLMTHAFFKALLFLASGSVILAC |
2 | 6n3tA2 | 0.07 | 0.05 | 0.74 | 0.70 | DisCoVER | | FIAAALPAIIGG-L------------AIAGALGIMRLVAPVHFFAQPVV------------TLIGLGIAID-YGLFIVSRFREEITEAAVRRTVMTSGRTVAVIIV-GFLKSITYAIIA-----------SVMLAAILSITVLAAALA- |
3 | 6j6oA | 0.07 | 0.05 | 0.77 | 0.83 | DEthreader | | NTIVQKFSEHYHDAWASRKIENSWDK-H-R---------------------------LNDYEKERYKEPVRESLKALLAGWSVE-HS--TLSEMQNMAERLAENAHDIWAKKKKLIHPQLV--LTAAEKAKDRERSQEFLKYLQYQGYK |
4 | 5xu1M2 | 0.05 | 0.05 | 1.00 | 0.69 | CEthreader | | LKFAFSSIMAHKMRSLLTMIGIIIGVSSVVVIMALGDSLSRQVNKDMFAEIQQSFSFMTTIISSIAGISLFVGGTGVMNIMLRANILIQFLIESMILTLLGGLIGLTIASGLTAGLIEGIEVGVSIPVALFSLAVSASVGMIFGVLPAN |
5 | 5fsaA | 0.09 | 0.09 | 1.00 | 0.85 | EigenThreader | | MKTQPEITIFTASRSLFEMRRIFDRSKKISATYMKEIDSLLIHSTYKDGVKMTDQEIANLLIGILMQHTSASTSAWFLLHLGEKLLKDLTYEDLQKSVNNTIKETLRMHMPLVSPGYAHTSERYFDNPEDFEQFAYVQLGTILTTFVYN |
6 | 4q2eA | 0.15 | 0.12 | 0.81 | 0.19 | HHpred | | ---VLTSTWVFDSFAYFTGLKFGRTRISP-----------------------RYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLVNVICFRTFLPFAATVAIMDTFGFECAYGVKDSGKTLP--GHGGMLDRIDGLLFVAPVSYIVF- |
7 | 2nq2A | 0.12 | 0.11 | 0.87 | 0.35 | MRFsearch | | -LTALCVGAGLALSGVVLQGIFRNPLVNPHIIGVTSG-----------------SAFGGTLAIFFTILFGFGTLALVFLFSFKS--LLMLILIGMILSGLFSALVSLLQYISSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSW |
8 | 6a2jA1 | 0.13 | 0.12 | 0.92 | 0.64 | FFAS-3D | | -MNKALKALGVLTTFVMLIVL---------IGGALVTKTGSGQGCGRQWPLCHPELNPASIIEWSHRFASGISIILVLSLAFWSWRKITP-IFRETTFLAIMSIIFLFLQALLGALAVVFGSN-ALIMALHFGISLISFASVLILTLLI |
9 | 3rlbA | 0.11 | 0.11 | 0.98 | 0.96 | SPARKS-K | | ---NVRLLTEIAFMAALAFIISLIPNVEIACIPILLLSLRRGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILII |
10 | 7d3uA | 0.12 | 0.09 | 0.73 | 0.97 | CNFpred | | --ATPVSAYLHAAAMVKA---------GIYLLLRFSEALH---------------DVPVWNLLLITCGMTTAVLGAVFAMQRD-------DLKELLAYSTISQLGFLVATIGVGTPAA-------MVAAIIHTIAHALFKSSLFMFVGV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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