Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | LPIVVGGLGAVLLLINRLLTPEITESQARADVLGVILSAVLILTGLIWQQVQPRSPDAVELIGEEGFVLAQDLPQAIKTELAWASHLLLTNTVTRSLVVFYQGKVLLRRGILGTKSEVTPGPILKRVQEKQQPVYLVNLKVYPGRIEFDYLPENTQGVICQPIGKEGVLILGANAPRSYTKQDENWIAGIADKL |
1 | 4o01A | 0.15 | 0.11 | 0.74 | 0.83 | DEthreader | | LP-FF--PPLYLG--------------------G--PEITTENCERE--YFATGE-G-----------------SLSHDTLSDPALDLLGLMRAGGLILRFEGRW-QTLGEVP-PAPVDALAWLETQ--PGALVQTDALGQLWPAGA-D-LAPSAAGLLAISVGESECLVWLRPAEPWHPGEIEEALRTLTGAL |
2 | 1ykdA | 0.11 | 0.09 | 0.81 | 1.00 | DEthreader | | --GFENILQEMLQSITLKTG-ELLGA-DRTTIVAAGEDRSL--------------------------------SLDLEDTLKRVMDEAKELMNADRSTLWLDELWTKITQDNGSTKELRVPKGAGIVAASGQKLNIPDLYDHPDSATAQIDYRTCSLLCMPVFELIGVTQLVNKASFDNDEEFMEAFNIQAGVA |
3 | 4mmnA | 0.22 | 0.13 | 0.62 | 0.56 | HHpred | | -----------------------------------------------------------------------DLKEFARSQMQAACQYLKEKYDWVGFYVLEHGKLKLFVGEKTDHVEINLGDLCSLAVLKNDIVNEYDVKSNPKYLA---CFPSTQSEIVVPVRYIGEIDIDSDKKAAFSKEDEAMLSSIADLM |
4 | 3ksfA | 0.13 | 0.09 | 0.66 | 0.80 | DisCoVER | | NYTLLKKQAAS--------------L--IEDEH-------------------------------------HMI-----AILSNMSALLNNLDQINWVGFYLLLILGPFQGHAC--VHIPIKGVCGTAVSERRTQVVADV--HQF-KGH-IADANSKSEIVVPIFIIGVLDIDAPITDRFDDNDKHLEAIVKII- |
5 | 3p01A | 0.16 | 0.12 | 0.79 | 0.38 | MRFsearch | | -------AAETYDLLKQR-----TEELRRANAQSLLTVLVQVTQAS----------------------------NSLEAILTPIATAFAESFVNACILQLEGQTLSTIQGFYSVNNWLNQDPLTNEAIATGQIQVAANIAKDPKLASISQYQDGIQSHVVIPITELGVLSLQWQQPISLREDELTLIHLSAQLV |
6 | 1f5mB | 0.12 | 0.09 | 0.80 | 1.03 | SPARKS-K | | ------SSTGFHHADHVNYSSNLNKEEILEQLLLSYEGLSD---------------GQVNW-------------VCNLSNASSLIWHAYKSLINWAGFYVTEENTLILGPFQGKVAQFGKG-VCGTAASTKETQIVPDVNKYPGHIACD---GETKSEIVVPINDGGVIDIDCLDYEGFDHVDKEFLEKLAKLI |
7 | 3mmhA | 0.13 | 0.10 | 0.75 | 0.74 | MAPalign | | -----HALHF-SA------------SDKAALYREVLPQIESVVAD----------------------------ETDWVANLANTAAVLKEAFGWFWVGFYLVLVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVDAH---PDHIACSSLSRSEIVVPLFCIGVLDADSEHLAQFDETDALYLGELAKIL |
8 | 3mmhA | 0.12 | 0.09 | 0.75 | 0.64 | CEthreader | | ---------------------------------------------MHALHFSASDKAALYREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVDAHP---DHIACSSLSRSEIVVPLFSDGVLDADSEHLAQFDETDALYLGELAKIL |
9 | 3lfvA | 0.13 | 0.13 | 0.96 | 0.54 | MUSTER | | MPIKNEEVVGVAQAINKKSGNGGTKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIF---EEQQSLEVILKKIAATIISFMQVQKCTIFICSDSFSSVFHMECEELEKSYMYAQYVKNTMEPLNIPDVS---KDKRFPW--QCIRSLLCTPIKNGGVCQLVNGKVKPFNRNDEQFLEAFVIFC |
10 | 1f5mB | 0.12 | 0.09 | 0.76 | 0.81 | HHsearch | | ------------------SSTGYSSNLNKEEILEQLLLSYE---GLS----D----------------GQVNW-VCNLSNASSLIWHAYKDINWAGFYVTQAENTLPFQGKVACQ-MIQGKGVCGTAASTKETQIVPDVNKYPG---HIACDGETKSEIVVPIISNGVIDIDCLDYEGFDHVDKEFLEKLAKLI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|