>PF11139 (210 residues) LLVMALAVSFEPFRLGMTVLMLNRPRPQLQLLAFLCGGFAMGTAVGLVVLFTFRHVSTGS AQFTLPRVQIGIGVAALLVAALLASRVRGPSSNAQLDKVTGRIQSIATGGSLWVALVAGL GIALPSVDFLAALAVIVASGTPAATQVSALLMFNIIAFALIEIPLLAHVVAPERTAEVMA RLNSWIQSNRRRNIALVLAVVGCVLLAVGL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
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Seq | LLVMALAVSFEPFRLGMTVLMLNRPRPQLQLLAFLCGGFAMGTAVGLVVLFTFRHVSTGSAQFTLPRVQIGIGVAALLVAALLASRVRGPSSNAQLDKVTGRIQSIATGGSLWVALVAGLGIALPSVDFLAALAVIVASGTPAATQVSALLMFNIIAFALIEIPLLAHVVAPERTAEVMARLNSWIQSNRRRNIALVLAVVGCVLLAVGL | |||||||||||||||||||
1 | 5vkvA | 0.12 | 0.11 | 0.89 | 1.00 | DEthreader | AALAGVLSFLSPVLPLVPTYLFYLGGARGRPLFNALFFILGFGAVFFLLGLPFTLLG--GLLFE-HR-QTL-ARVGGVVLVLFGLYMLGLR---W--V------G--ETSRPLGAFLLGATLALGWTCIGPILGAILTLTAVGG-GVGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHYVEV-LAGVVLVLVGVLLFTGT-FT-- | |||||||||||||
2 | 5vkvA | 0.11 | 0.10 | 0.90 | 1.17 | DEthreader | AALAGVLSFLSPCVPVPTYLFYLGGARGR-PLFNALFFILGFGAVFFLLGLPFTLLG-GLLFE--HR-QTL-ARVGGVVLVLFGLYMLG--LRPR--V--YEGETSR--P---LGAFLLGATLAGWTCIGPILGAILTLTAVGG-GVGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHYVEV-LAGVVLVLVGVLLFTGTFTN-- | |||||||||||||
3 | 5vkvA | 0.17 | 0.15 | 0.89 | 1.06 | HHpred | AFLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF-----EHRQTLARVGGVVLVLFGLYMLGLRP--RWGV-SLRYE------GETSRPLGAFLLGATLAC-IGPILGAILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGW-LRRAGRISHYVE----VLAGVVLVLVGVLLFTGTF | |||||||||||||
4 | 4zowA2 | 0.05 | 0.04 | 0.80 | 0.57 | DisCoVER | VLRFVAGALALGFVSLPLLAWAQIIEYGLLQVPIFGALIAGN--LL--LAR----------LTSRRTVRSLIIMGGWPIMIGLLVAAAATV--ISS--H------AYLWMTAGLSI-YAF-GIGLAN-AGLVRLTLFASDM---SKGTVSAAMGML---QML-IFTVGIE---IS---KHAWLNGGNGLFNLFNLVNGILWLSLMVIFL- | |||||||||||||
5 | 5vkvA | 0.16 | 0.14 | 0.89 | 0.35 | MRFsearch | --LAGVLSFLSPCVLPLVPTYLFYGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFE-----HRQTLARVGGVVLVLFGLYMLGLRPRWGV---------SLRYEGETSRPLGAFLLGATLALTPCIGPILGAILTL------TAVGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHY-VEVLAGVVLVLVGVLLFTGTF | |||||||||||||
6 | 3wdoA | 0.10 | 0.10 | 0.99 | 1.05 | SPARKS-K | IILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVV--PNSSTHVLNREGMVKGSFSKVLAEPRLLKLNFGIMCLHMLLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALL | |||||||||||||
7 | 5oqtA | 0.08 | 0.08 | 1.00 | 0.89 | MAPalign | LTMLGIGAIIGTGIFVLTGVAAA-EHAGPALVLSFILSGLACVFAALCYAEFASTSYATFGELIAWILGWDLILEYGVASSAVAVGWDPAKGTFIDLPAIIIVLFITFMPYGFSGVATGAAVFFAYIGFDAVSTAAEEVRNPQRDMPIGIIVSLLVCTLLYIAVSLVLTGPVAFALDWVAGFISLGAIAGITTVLLVMMYGQTRLFYAIS | |||||||||||||
8 | 6l85A2 | 0.09 | 0.09 | 1.00 | 0.52 | CEthreader | AGILGFIMAFSANDVANSMATAVGARVRQAALIAMFLEFLGAVMFGSHVSQTIVKGIVEVEKVQPVELMYGALSALIAASFWILIATNWGYPVSVVSPVLGGLISFVMFKQILTSCYVSFSHGANANAAGPVAAVMIVATGVVPKTVEIPFLALLLGGIGISLGVFFLGQKVMETVGEKITTLTNSRGFTVDFSTATTVLLASSLGLPIS | |||||||||||||
9 | 5vkvA | 0.16 | 0.15 | 0.90 | 0.81 | MUSTER | AFLAGVLSFLSPCVLPLVPTYLF-GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHR-----QTLARVGGVVLVLFGLYMLGLRPRWGVSLRYEG-----ETSRPLGAFLLGATLALGWTPCIGPILGAILTLTAVGGG--------VGFLLAYILGLAVPFFVVALFADRIKGWLRRAG-RISHYVEVLAGVVLVLVGVLLFTGTF | |||||||||||||
10 | 5vkvA | 0.17 | 0.15 | 0.87 | 2.04 | HHsearch | AFLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF-----EHRQTLARVGGVVLVLFGLYMLGLRP----RWG--V-SLRYE--GETSRPLGAFLLGATLAWTPGPILGILTLTA-----VGGGVGFLLAYILGLAVPFFVVALFA----DRIKGWLGRISHYVEV----LAGVVLVLVGVLLFTGTF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |