>PF11079 (259 residues) MQQHEIHQFLERYFRANECDILEADDGYIKVQLSIEMDKELMNRPFYWHYIERTGGTPAP MQLTLITKQTEKTNSLEGERLHFGSPRLHQIFRSAQKRGGFIRLYEEVDTYQQSHIPLHP WLGLNVKISYQCDRTKDQILSLGLHLISGTIIEQFHDRLQKLKLTPKIPDYCFTISPLIK PKSGIGRLEQYIRRHIFQDDHTWAEKAKERWAEDLALLDHFYEGMEEKPECYYIEKEALE EQYKPRIIVSVINGGLFYL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MQQHEIHQFLERYFRANECDILEADDGYIKVQLSIEMDKELMNRPFYWHYIERTGGTPAPMQLTLITKQTEKTNSLEGERLHFGSPRLHQIFRSAQKRGGFIRLYEEVDTYQQSHIPLHPWLGLNVKISYQCDRTKDQILSLGLHLISGTIIEQFHDRLQKLKLTPKIPDYCFTISPLIKPKSGIGRLEQYIRRHIFQDDHTWAEKAKERWAEDLALLDHFYEGMEEKPECYYIEKEALEEQYKPRIIVSVINGGLFYL | |||||||||||||||||||
1 | 3dmqA | 0.10 | 0.08 | 0.83 | 1.08 | MRFsearch | --DTNLIAFA-NLFDIIGINQDDRG-DNIVLTPSDHLVPDFP--------------GLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGSSTISLLKNKAL-----PVGTLLVELIYVVEAQAPLQLNRFLPVRLLDKNGNNLATFNRQLNAV---------------QQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNDDELTAIESNRQQVESLDQAGWRLDALR------ | |||||||||||||
2 | 6bogA | 0.08 | 0.08 | 0.92 | 1.14 | CNFpred | DDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD--------------PGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTISLLKNKALPV----GTLLVELIYVVEAQA-FLPPTPVRMLLDK-NGNNLAVEFETFNR-QLNAVNRHTGSKLVNQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVN-DELTAIESNRQQVMESLQAGWRLDALRLIVVTH | |||||||||||||
3 | 6ofsA3 | 0.07 | 0.03 | 0.48 | 0.72 | DisCoVER | ----------------------------------------------------------------------------------------------AE-NHLRFNIINDKE-------NRVNGIALYYRLPEWMQLPDYQSLFFRVNAR------------------------DDNMQDAANA--LMAELATIDQ-----HGF-SAEELDDVKSTRLTWLKNAVDQQNTPFLSPEETYQLSKLWITVKWLNQDAFWEQMV- | |||||||||||||
4 | 3dmqA | 0.09 | 0.07 | 0.76 | 0.83 | DEthreader | -S-GL-----VFNP--G-D-I-TSHDGWQ-QVEE-----------------------EESGVALLDSK-V---------PQDRLFAG--Q-IDRRFILSGDTGSSTISLLKN---PVGTLLVELIYVVEAQQLRFLPTPVR-LLD----KNGNNLAAQVFETNRQLNAVTGSKLVVQQDVH-IL-QLGEAQIEKSARALDAARNEADEKLSAELSRLEALRNPNIR-D-DELTAIESNRQQVESLDQAGWRLDALRL-- | |||||||||||||
5 | 3dmqA4 | 0.09 | 0.08 | 0.82 | 0.57 | CEthreader | ---------------------------------------------FSKPQDRLFAGQIDRDRFALRYRARKYSSEQFRQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRLPPTPVRLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVESLDQAGWRLDALRL- | |||||||||||||
6 | 6b1zA | 0.10 | 0.08 | 0.83 | 0.70 | EigenThreader | SERRDIYDRYTEQILKTDYAYLAFTPYVIRFKMPL--------------------DRTLDDKVLVK-----NDGMPTYHFANIIDDHEMLHVLLYEAMGWEFAHLSLILKPEGKGKLGFPVFPLNFTD----PATGNTSAGYR---EEGYLPEAFINMVAMLGWSPADLNKVHKAGARFSAEKAKWFNQQYLQLMSKKAAVLMQELTEAISGKVMMPLRLSLVGPDVPDLMEMIGKEETISRINKAIT----------- | |||||||||||||
7 | 3dmqA | 0.10 | 0.09 | 0.89 | 0.87 | HHpred | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---V--PDFP-------GLS--EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTSLLKN-KA---LP-VGTLLVELIYVVEAQAPKQLNRFLPL-LDK-NGNNLAAVEFETFNRQLNAVNRHTKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNRDTAIESNRQQVESLDQAGWRLDALRL----- | |||||||||||||
8 | 3dmqA4 | 0.09 | 0.06 | 0.65 | 0.57 | MRFsearch | ------------------------------------------------------------RDRFALRYRARKYSEQFRQFITWEHPLIRNGLDLILSTGSSTISLLKNKA------LPVGTLLVELIYVVEAQAPPTPVRLLDKN----VEFETFNRQLNAV---------------QQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNDDELTAIESNRQQVESLDQAGWRLDALR------ | |||||||||||||
9 | 3dmqA4 | 0.08 | 0.07 | 0.78 | 0.67 | FFAS-3D | ---------------------------------PQD---------------RLFAGQIDRDRFALRYRARKYSSEQFRQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTL--LVELIYVVEAQAPKQLQLNRFLLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNDDELTAIESNRQQVESLDQAGWRLDALR------ | |||||||||||||
10 | 5cqcA1 | 0.09 | 0.07 | 0.78 | 0.71 | SPARKS-K | MNSSRLHKLYSLFFDKLGDDVSVLLTGAYGFQSK--------KNDQQIFLFRPDSD------YVAGYHVDA---KSDAGWVN---DKLDRRLSEISEFCSILPFVEMPTDITKGVQH-------QVLLTISYDPKSKQLTPTVYDSIGRTCDEILTQSIEKADFTLGKFTRAAYNTEGNCGSYTFRTIKEVISSSAQGLTSQHVQDIESCIKYRVVDIESALTEGKTLP------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |