>PF11060 (264 residues) WFDQITPLTQAHQNLLNNNLEAMFNSLVEVWQLEHNKNIQSHLNELLLQSLTVDCGKSLD KKPLPEWLKSITINRQEIQSPGRDAFHVDIEVDAEKPLADIRLAQWVDKSLSTDSLLTTT SSDSVTGKAHYLKRYNLNSKITMGLYRLDITAKDQQSWSAWIVLGEPKAKQIVRWASKDQ WQIEKKALLNPYCPLPELNVSLYDYIDGKYSEIWSQRYESEYPNELEITNLAADRYVLAV SMTQQRWQGPIIIEQSQVISKTYD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | WFDQITPLTQAHQNLLNNNLEAMFNSLVEVWQLEHNKNIQSHLNELLLQSLTVDCGKSLDKKPLPEWLKSITINRQEIQSPGRDAFHVDIEVDAEKPLADIRLAQWVDKSLSTDSLLTTTSSDSVTGKAHYLKRYNLNSKITMGLYRLDITAKDQQSWSAWIVLGEPKAKQIVRWASKDQWQIEKKALLNPYCPLPELNVSLYDYIDGKYSEIWSQRYESEYPNELEITNLAADRYVLAVSMTQQRWQGPIIIEQSQVISKTYD | |||||||||||||||||||
1 | 4kh9A | 0.09 | 0.08 | 0.89 | 0.64 | DisCoVER | ----------GFT-LPRQPTKAYECENCSLSRENLRRSYGYKLAPGAVVRITPLQQALQYISVLDKSITYLEVETDSLHYQYGDKLKATISLHNEYDVNDVDARLVGPKQVISLNLT-KL------KSNVFEGTATLDSNDENWYLETDVQTEYIIRRSGHTAFSYSIPSASLNVKKTFVVTVDVA------TASRYALQSVLFQKGEAPIQTSQRAQLEPGKHVLQFTFDNLDNLYLGYLRLIDYGQ----LKTVYQYPVKL- | |||||||||||||
2 | 4yzpA | 0.06 | 0.04 | 0.75 | 0.83 | DEthreader | YWDWWGRTT-------------LGANEKHSKWLY-DTFVRA--WWDNGNDQFDRERQWPKEIVIQAVPNAIIKPDLFIKK-GQSISQTVDIQLNG-NVLTGI-YQKSEPLKESDYTVDNA--------GKTVSIKACLAKLLVKAQLTFTFH---KGASQVMDIILY-D--D-PKLKSEKIPASLN----------GTKLATVK----WTPYLNYDE---KDGDLYLKEVLLDSTFTFELW--------------PKGVEAVVK | |||||||||||||
3 | 4kh9A | 0.06 | 0.06 | 0.97 | 0.66 | CEthreader | KNQLLPLKEASSLYNQDDEVGNNPLAITKHQALQIKPELGYGKFILKSKDITNKYADAYISVLDKFSITYLEVETDSLHYQYGDKLKATISLHNDITEYDVNDVDAR-LVGPKGQVISLNLTKLKSNVFEGTATLDSELNDRGENWYLETDVQTEYSGHTAFSYSIPSASLNVKKLSSKPLTFVVTVDV---ATASRYALQSVLFQARPIQTSQRAQWLEPGKHVLQFTLSDDNLYLGYLRLIDY-----GQLKTVYQYNQPVK | |||||||||||||
4 | 4acqA5 | 0.07 | 0.05 | 0.68 | 0.80 | EigenThreader | --------------------------------------------------------------------SLVFVQTDYK---PGQTVKFRVVSMDEELIPLVYIQDPKGNRIAQWQS-FQLEG-----GLKQFSFPLSSEPF-QGSYKVVVQKKSGGRTEHPFTVEELANKVDLSFSPASHAHLRVTA-----APQSVCALRAVDQSVLLMKWIWDLVVVNSAGVAEVGVTVPDTITEWKAGAFCLSE--DAGLGISSTASLRAF | |||||||||||||
5 | 4fxgA5 | 0.08 | 0.04 | 0.55 | 0.30 | HHpred | --------------------------------------------------------------------GHLFLQQ-PIYNPGQR-VRYRVFALPSTDTITVMVEN-SHGLRVRKKEVYM------PSSIFQDD-FVIPDISEPGTWKISARFSDGLNSSTQFEVKKCEGKLELSVDGAESVKLHLETDSLALVALGALDTALYAAGSKSHKPLNMGKVFEAMN----------------------------------------- | |||||||||||||
6 | 2pn5A1 | 0.09 | 0.06 | 0.65 | 0.53 | MRFsearch | -------------------------------------------------------------------GDTVNFRVIVLDTPPARVKSVYVTIRDPNVIRKWSTAKL-------------------YAGVFESDLQIA-PTPMLGVWNISVEVEGEELVSKTFEVKEYVSTFDVQVMPHQAVNLTIEANYKPVQGVAKVELYLDD---DKLKLKKELTVKGQVELRFDNFAMDADQQDVPVKVSFVEQYTNRTVVKQSQITVY-- | |||||||||||||
7 | 5a1wH | 0.09 | 0.09 | 0.94 | 0.54 | FFAS-3D | --TKNSNILEDLETL---------RLFSRVIPEYCRALEENEISEDLIFAFDEIVALGYRENVNLAQIRKIEEKITLTCGRDGGLQNMELHGMDKFGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVWRLQTTEESFIPLTINCWPSESGNGCDVNIDNLELNDVVITIPLPSGVGAPVIGEGEYRHDSRRNTLEWCLPVIDAKNLEFSIPGQPNDFFPVQVSFISKKNYCNIQVTKVTQVD---- | |||||||||||||
8 | 6mabA | 0.12 | 0.10 | 0.85 | 0.74 | SPARKS-K | --SNIQQYKKTLSSITSDNALFKAHTLQQTIPLN--IDILALFSEIFDLALSKEMEKIFHSTY-----KEISLVKKE---ADGNF-RVVASSRIEQLGKNY-------------NQEIFLSDSQP--FLATLRHSGSDSQV-LAVLQTNIFDISSQEVLGVLYTLAAKDSVKTAILSKNGIILQAT--------DSSLDLVSITVSKEQFCDVF---LRDDIRPPLNLDPLPYGENFVSFCIEMWGYIHSLRILTYEEKSIIFA | |||||||||||||
9 | 4ufcA | 0.14 | 0.09 | 0.63 | 0.79 | CNFpred | ------VLPVVRKLIFEGRNKEAQRLIDANFLT------QQHGMSYL-------------------TLGSLYLEFPEHQ--NGSGFYRDLNLE--NATTTTRYQVD--------------------DVTYTRTTFASF---TDNVIIMHIKASKANALNFTIAYNCPL-VHKVNVQ-NDQLTVTCQG-----KEQEGLKA--------------------------------ALRAECQIQVK-RPAGNTLQINEGTEATLYIS | |||||||||||||
10 | 3czjA | 0.07 | 0.05 | 0.73 | 0.83 | DEthreader | AVTVSLWQQVASG-RLNVENPKLWSIPNLYR---------ACD--VG--FREVRILLLLIGNREMVQDILLQNNF-----------------------------ICPMYARYAHAMGN--------------SLGGFAKYWAFQGGFVDWVQSLC-NGL--AKQQQFFQFRLSG-------QTIEVTSYFRHSDNELLHWMVALD----GKPLASGEVPLDLIELPELPQPE-SAGQLWLTVRVVQATAWSHISAWQQWRLAEN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |