>PF11054 (244 residues) LTLVGALLAFVGGSSGAETTYTYSVKLGDEGACLTKINSAREAAGFSNFVQANADATGKR LPAGFESDDGTEYNSSAWKSVCDVLLPKTSDTNPAIAATLTKFDSGTYAFKALKSDVPDC SAVVDEWKGAYKNFDGPPPPNSKDQQLYSNPTNVSLVAIYNPSSGATADCRVVTCSRTTQ TTEPQATESASGFALICMTTPDVLPEDNSTVPFTDEQWKRIVKAIKGSAVTAVPSLLGLA ATAL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LTLVGALLAFVGGSSGAETTYTYSVKLGDEGACLTKINSAREAAGFSNFVQANADATGKRLPAGFESDDGTEYNSSAWKSVCDVLLPKTSDTNPAIAATLTKFDSGTYAFKALKSDVPDCSAVVDEWKGAYKNFDGPPPPNSKDQQLYSNPTNVSLVAIYNPSSGATADCRVVTCSRTTQTTEPQATESASGFALICMTTPDVLPEDNSTVPFTDEQWKRIVKAIKGSAVTAVPSLLGLAATAL | |||||||||||||||||||
1 | 2vznA | 0.06 | 0.05 | 0.73 | 0.72 | DisCoVER | IHTMCQYP--TP--GP-MCLEYSNVGFKAIVKHNELRQRVASGQPP--AVKM-------PNLTWDPE---------LATIAQRWANQCTFEHDACRNVE---RFAVGQNIAATSSGNSPNEMILLWY-NEVKDFDRWISSFPSDDNIL--MKVGHYTQIVWA---KTTKIGCG-RIMFKEPDN-----WTKHYLVCNYGPAGNV---LGAPIY---E--IK--KHHH----------------- | |||||||||||||
2 | 3j9dA | 0.06 | 0.05 | 0.71 | 0.67 | DEthreader | ---------WM-KDSMDAHTMMHLETF-RLN------M--MGGWNQQFKMHLNVIIAPMFNAKITAL--TLARFYD-IRP-------PTVTAQYTERYALIISILQH---ISQVYRHARRRMRGRLVIAYGGLLGLAVVQN-----MY----LNFLPIPLLLVMVVPLEVG----------------------LIYLYMFFPSKAIRFSKLNAQPKIAREMLKYYAN-T-TVYDGGVN------ | |||||||||||||
3 | 3q2rA | 0.10 | 0.08 | 0.77 | 0.80 | CEthreader | ----------------------NILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPA----------LAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRIC---------KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFD-----ALSNGAHFICNYGPGGPYKRGATCSACPNNDKCLDNLCVNRQRDQV----------- | |||||||||||||
4 | 1xtaA | 0.06 | 0.05 | 0.75 | 0.72 | EigenThreader | -------------VDFNSES------TRRKKKQKEIVDLHNS-----LRRRVSP----TASNMLKM-----EWYPEAASNAERWANTCSLNHSP-----DNLRIQCGESIYMSS--NART--WTEIIHLWHDEYKNFGV------GASPPGSVTGHYTQIVWYQTYRAGCAVSYC------PSSAWS-----YFYVCQYCPSGNFQGKTATPYKLTNCDSLLKQSSCQDDWIKSNCPASCFC-R | |||||||||||||
5 | 3nt8A2 | 0.14 | 0.09 | 0.70 | 0.38 | HHpred | -------------TNQQPSNTGM--TDSVRDTFLSVHNEFRSSVARGLEPDAL----GGNAPKAAKMYDCEVEAAIRHGNKCVYQHS----------HGEDRPGLGENIYKTS-VLKFAAKQASQLWWNELKEYGVPSNVLTTALWNRPNMQIGHYTQMAWDTT-YKLGCAVVFCNDF--------------TFGVCQYGPGGNYMG--HVIYTMGQ--------------------------- | |||||||||||||
6 | 1xtaA | 0.15 | 0.09 | 0.62 | 0.58 | MRFsearch | ------------------------------KEIVDLHNSLRRRVS-------------------------MEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQCGESIYMSSN--ARTWTEIIHLWHDEYKNFVYGVGASPPGSV------TGHYTQIVWYQ-TYRAGCAVSYCPSS-----------AWSYFYVCQYCPSGNFQGKTATPYKLGNCDSLLKQSS------------------ | |||||||||||||
7 | 1smbA | 0.13 | 0.07 | 0.55 | 0.59 | FFAS-3D | -------------------------------EVLKAHNEYRQKHGVPPLKLKN--------------------LNREAQQYSEALASTRILKHSPESSRGQ------GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--------TGHFTAM-VWKNTKKMGVGKASASDGS-------------SFVVARYFPAG--NVVNEGFFEEN---------------------------- | |||||||||||||
8 | 3q2rA | 0.10 | 0.08 | 0.78 | 0.78 | SPARKS-K | -------------------NILPDIENEDIKDCVRIHNKFRSEVKPTAS----------DMLYMT----WDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDF------KTRICKKVCG--HYTQVVWAD-SYKVGCAVQFCPKV-----SGFDALSNGAHFICNYGPGG---NYPTWPYKRGATCSACPNNDKCLDNLCVNRQRDQV--- | |||||||||||||
9 | 2j9oA | 0.08 | 0.05 | 0.61 | 0.71 | CNFpred | --DNTATNMIIDRL-----------------GGAAELNQQFQEWGLENTVI------NNPEPDMKGTNTTS---PRDLATLMLKIGQGE----------------------------ILSPRSRDRLLDIMRRTVTNTLL----PAGLGKGATIAHKTGDIG--IVVGDAGMVDMP------------NGQRYVAAMMVKRPY----------NDPRGSEL-----------IRQVSRMVYQAF | |||||||||||||
10 | 2vznA | 0.12 | 0.07 | 0.63 | 0.83 | DEthreader | -----------------PMCLEYSNVGFTDAEAVNKHNELRQRVAKMPNLTW-------DPEL---------AT-IAQRWANQCTFE--------DA--CRNVFAVGQNIAATSSNKSTPNEMILLWYNEVKDFDNRWISSF----PSDDNILMKGHTQIVWAKTTKIGCGRIMFKE-P--------DNWTKHYLVCNYGPAGNV---LGAPI------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |