>PF11038 (278 residues) AGGSLTQSDIRGGGSAVPTLLVVALPPPFRWASDPQLGTHLSFVPTSTAQPSGFGGLWGA MLRNATWERNATNPSTVLELAVPVHRGYFIAADETIVIRCDAAAVFGGCKGVLLGFFTIR SSTLPAVASALSAITGVVAGAAAVAVVVTGGLGSILGMQALGVFARMSCASVQERASTAA LPYFLSVFAALDPLWMVVGNALLAAVFGCVHYGVTAAFQRWRGVDAASAWAAMRFPSLTY VVAHAMHLGIFFGSVLALAMPGARVQHRVIGVVGVLYG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | AGGSLTQSDIRGGGSAVPTLLVVALPPPFRWASDPQLGTHLSFVPTSTAQPSGFGGLWGAMLRNATWERNATNPSTVLELAVPVHRGYFIAADETIVIRCDAAAVFGGCKGVLLGFFTIRSSTLPAVASALSAITGVVAGAAAVAVVVTGGLGSILGMQALGVFARMSCASVQERASTAALPYFLSVFAALDPLWMVVGNALLAAVFGCVHYGVTAAFQRWRGVDAASAWAAMRFPSLTYVVAHAMHLGIFFGSVLALAMPGARVQHRVIGVVGVLYG | |||||||||||||||||||
1 | 4tkoB | 0.09 | 0.05 | 0.57 | 0.72 | DisCoVER | ------------------------RIEYAITNAVFKADELSYLSFRVSGKVIEVYKDLGDYVKRGEALAKLDPKIKDTVLIAP-----FDGVVAKRFIS------RGDVVRAGQPAFALVNPE-SFYVEVLLEETKLKGV---K-------------V-------------------------GNKAYVRLDA-IL-FEGVVEEISP-V--QR--IP---------------------------VKIKIT-KGDLSL-LR------VGMGGEVEIRR- | |||||||||||||
2 | 6kptA | 0.07 | 0.06 | 0.77 | 0.83 | DEthreader | -HTVTLPEGFKKSMRALFGWDKLA---RAQWALIEHIGANPAMYATMVLTGAGRKRFIT-------------------------EHKM--GLKVSATC--WLVNGIAQMFDVIQAMVKAAT-STGYLNQKYAEGLRAIYLYTNLLLFKIRDKGQLAYVAGEIEQFIKENGLK--RELLATALADVQGMASLGSVRFLMAVGDLLSGWLLARQAAV--K---ATGADKSFYEGKIA-AASFFAKNMLPLLTST---I---VML---------------- | |||||||||||||
3 | 4kc7A | 0.08 | 0.08 | 0.98 | 0.57 | CEthreader | WAVVHDPSIIKVGNMYYVFGQVAKSKDLMHWEQINTSAHDKNPIIPNINEELKETLSWARTRNDIWAPQVIQLSDGRYYMYYCASTFGSPRSAIGIAVSDDIEGPYK------HYAVIVKSGQVYSVDGPSEDGTPYDSRKHPNALYDKEGNLWMVYGSWFGGIYILKLDPNTGLQGYGKRLVGGNHSSMEGPYILYSPDTDYYYLFLSFGGLDYRGGYNIRISNYGAKLVGNFILSESNTIDFKAFGYVSPGHNSAYYDPETGKYFIFFHTRFPGRG | |||||||||||||
4 | 6f8zA | 0.04 | 0.04 | 0.97 | 0.63 | EigenThreader | YVNPFIGTGAIDGGLSGNNTIFGLIDITLMPTSSGRTSKDAEIILDMDHSADKGSWGRRIINSQIRILND-----HAVEGYRIGWAKLRKIY--FYMEFSSPILENTAVINGTTCKVALSSTFSLWDTFHPLYTLLEPERVTDFVKSMIRQYEYYGSIPVITDAILKGIPGITLEQAFDDWCVAQLAAKLNKDADYQRFHKRSEYYRNLFDTFFTSAYLYNFAGQPWKTQKYVSHILNTLDCGQMSAWYVFSAMGFYPVNPADGRYIIGEFRIRTIRK | |||||||||||||
5 | 3wajA | 0.16 | 0.05 | 0.30 | 0.36 | HHpred | ------------------------------PVKIAPSGYVKIFERVKGAVVTGKVSANVVSVRTFEYWQTVEVKNGTYTVVLPYSTPYHIKAGNVKEITIYESQVQNGEIIQL--------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 7bvfA1 | 0.15 | 0.08 | 0.52 | 0.73 | MRFsearch | ----------------------------------------------------------------------------------------------------------------IVATLTAT-----LAPQGLIALAPLLTGARAIAQRIRRPLAVLAAALSLITVVVFRDQTLATVAESARIKYKVFLTVESNVEGSMSRRFAVLVLLFCLFGVLFVLLRRGRVLASGPAWRLIGTTAVGLLLLTFAGLAGVLGAVTAFTFA----------------- | |||||||||||||
7 | 4hkrA | 0.20 | 0.09 | 0.43 | 0.54 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------RAKLKASSKTSALLSGFAMVAMVICTTLLVAVHMLALMISTCILPNPHERLHWYIETAWAFS---------TLLGLILFLLEIAIL------CWVKFYDLSRRAAWSA------TVVLIPVMIIFMAFAIHFYRSL----VSHK---------- | |||||||||||||
8 | 5cqcA | 0.12 | 0.12 | 0.96 | 0.62 | SPARKS-K | IYPPETSWEVNKGMNS--SRLSLFFDSAFYLDVSVLLTGAYGFQSKKNDQQRPDSDYHVDAKSDAGWVNKATQPATLPFVEMPTDITKGVQHQVLLTISYDPK------SKQLTPTVYDSIESLSSYFKGKYRTTCDEILTQSIEKAIKGNCGSYTFRTIKEVISSSSYLTSQHVQDIESCIKYRNLGVQLSEFIVALEDYGKLRSQLTAVELLIGILNDIKGKNE---ISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFD- | |||||||||||||
9 | 7a23M | 0.08 | 0.04 | 0.42 | 0.85 | CNFpred | ------------------------------------------------------------------------------------------------------------------------------LPEAHVEAPTAGSVILAGILLKFGTYGFLRFSIPMFPEAT-------LCFTPFIYTLSAIAIIYTSLTTIDLKKIIAYSSVAHMNLVTIGMFSP-----NIQGIGGS----ILLMLSHGLVSSALFLCVGVLYD------------------ | |||||||||||||
10 | 1nktA | 0.08 | 0.05 | 0.68 | 0.67 | DEthreader | -G------------------FARALQRPFDVQVMG-AANVAEM-HIVT----DRRVAYYGTNNEF------------DEVSIEPLIITITNYRLYLAGMTG--IPTNMP---------RKLKYDEVMNQQRKVIYAERRRILE------------GEN-LKDQALDMVRD---LELK--ERYAAREAELEEAGGAMQLERNVLLNVIDRKWREHLYEMDYLGIREYQREGYDMFM-AMLDGMKEESVGFLFN-------------------VTV---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |