>PF11035 (327 residues) MKPPQRRRAAPARYLGEVTRPAAWSAREKRQLLRLLQARRGQPEPDAAELARELSGRSDA EVQDFLRQLKRRVAREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTV AFSQVLTIAATEPISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAPE ASSESLAGPSAEGEFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRL PCAALVEHMTDMYLHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSE AISTWQAAGVCPLNPFLVPLELLGQAA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MKPPQRRRAAPARYLGEVTRPAAWSAREKRQLLRLLQARRGQPEPDAAELARELSGRSDAEVQDFLRQLKRRVAREAIQRMYPGGPQGLRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEPISLLHSKPPKPTQARGKQLLLSAPGGQEDKGPEAPGPAPKVQGPAPEASSESLAGPSAEGEFSVDFEKIYKYLSSISRSCHGPELSAAESAVVLDLLMALPEELSRLPCAALVEHMTDMYLHLMAPQPDSANGSLGSGAEDGGSGSRGQEEAGQATPQAPENAGPSEAISTWQAAGVCPLNPFLVPLELLGQAA | |||||||||||||||||||
1 | 6jpuA | 0.08 | 0.06 | 0.71 | 0.62 | DisCoVER | --SLS--FESVG---------GLNYINQ--------------------------------------------L--EMVMLPLPEIFQRFNMQP-PRGVLF---------------------HGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKVGEAERQLIFFDEIDGLAIHIVTLLALMDSRGQVIIIGATLRGRFYF-PLPDARKIIGGADLRPSSSPE---LKPLLKPRFLICGRKLGQTVHVQSFDLLQDSTQSIESILFVSIIYIPDIDAITFQILFLALSSSPLFSVY-SL--Q-YPSIIAFFTVDQL----- | |||||||||||||
2 | 6m76A | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | -QNGRFTH-----PNPFYWSTGSALKYE-KPA-LMPEYGGQEVGALKTMIVSGAGTQRAGIWTGHGSDMDGGKNKEVNIR-----FAFDQEA-TD-L--NRAYLKLK-SMM-----MPYNYSIAKPMVRAMSQYQVAPIYNGN---AGNSIRDGIY----L--P------DEK-------QVWVDLTGEKKTPLWKVPV-FV-KDG-SI----------------------NNPKEIQ-RD-QR--SFLIY-ATSFNMYEDSYEAGQSATTKIN-QTVTIEPTKVDERST------FLAG--YYFDKEFQ------V--NQYLSE-- | |||||||||||||
3 | 1vt4I | 0.08 | 0.08 | 1.00 | 0.70 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 5udiA | 0.06 | 0.06 | 0.95 | 0.65 | EigenThreader | LRCHFTWELSIDNRVLDQIEFLDTKYSVGIHNLLAYVKHLKGQNEEALKSLKEARSLVTWGNFAWMYYHMGAEAQTYLDKVENICKKLSNPFRYRMECPEIDCEEGWALLKCGG-KNYERAKACFEKVLEVDPENGFKLATKNHKPFSAVRLN----PDNGYIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKG--------SVDKALELLKKALQETP---TSVLLHHQIGLCYKAQMIQIKEATKGQPRGQNREKLDKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLLCMKPV | |||||||||||||
5 | 5eybA | 0.16 | 0.06 | 0.39 | 0.52 | HHpred | ------ARMPRDRWRDFKLKRNAWSLEEETQLLQIVAEL---SDINWTLVAQMLGTRTRLQCRYKFQQLTKAWLLERIYDSLLN-----------NGGKI-HWENIVKEANRWTRDQMLFQFINLKKM-------I-------------------------------------------------------PSYDNLPLLEATKSAIDDFKV------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 5eybA | 0.11 | 0.06 | 0.53 | 0.60 | MRFsearch | ----------EKYSRKNSSGRGDFGVQETAIISQEVHNFIMDIRMFYSNLYKKLSHRDAKSIYHHVRRAEDEELRKNVVEH------------------GKCWTKIGRKMA-RMPNDCRDRWRDVVRFGLEEETQLLQIVAE---------------------------------------------------LSDINWTLVAQFQQLTKAA---SKFELQENVWLLERIYNIVKEANGLPLLEATKSAIDDFKVVL---------------------------------------------------------------------- | |||||||||||||
7 | 2xb0X | 0.11 | 0.06 | 0.57 | 0.77 | FFAS-3D | ---PLGS----------------IGESEVRALYKAILKFGNLKE-ILDELIATLPVKSFEKYGETYDEMMEAAKDC-----------------------VHEEEKNRKEILEKLEKHATAYRAKL---------KSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKS------------------------LNAESLLSRVEDLKVQNWSSNWTKEEDEKLLIGVFKYGTQIPFLGAIHLGRRVDYLLSFLRGGLN------------------------------------------------------------------ | |||||||||||||
8 | 5es2A | 0.09 | 0.08 | 0.88 | 0.67 | SPARKS-K | -----------------TFVLKEFDKSHFNDTVKIILQREKKDKIELTAVLNQLEAKIDELLASYVHVFYGLVCKDVENNLRVEKLDGGISDENIPTIFYRGLNKFLNFIYNDSRKGLLKKIYSLAKLSYEQEEAAENNKLTADGKTKANANSFHVEKPIDSSIVEQFKSWDEKG-ALHQLILDELSDKNVAKALSQARSAQLKFLQTAEQLDKIPNLEPSEKAILAGIHTGLSTILNADCCEDKEVLIAAANKFIRH-VIERPEITKESVRENNFSDIAGFQ---------------------LISVLTLIQNIKTCRTDAIEACV | |||||||||||||
9 | 4hb4C | 0.10 | 0.06 | 0.55 | 0.67 | CNFpred | -------------------------VRGLRTIKKEILK-------LVETYISKA-RNLDDVVKVLVEPLLNAVLEDYMNN-----VPDARD------EVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFT----EYPEHRVEFYKLLKVINEKSFAAFLELPPA-------------------------AFKLFVDAICWAFK-----HNNRDVEVNGLQIALDLVKNIERMNVPFANEFHKNYFFIFVSE-------------------------------------------------------------------- | |||||||||||||
10 | 6vr4A | 0.05 | 0.03 | 0.72 | 0.67 | DEthreader | LIEKNARSYIPGSYFTGVATYTNGTNLRLHRWAFLISWYYNKILSEKLAA-----------PLKGVYSQAVLLL-QLLVNIVTDEN--GDILKSISFGLDQT-AKGIT-VA-VPDYAKLILIGILPDTIVAYTEIPTGSDID-DNSKQTGFYKLFQRYSKI--------TNKNKSVDFQDR----------------------F-NGFENKLIDIKIPYQWFLNDIRSFIESKNTGLKDS-S-ESLRSFEEQFIKNNSDSNAPK-----GSDLYRRTNKLG-FE--D-PKSF---------------K---------------D-LE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |