Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | RMLLSHNFDVSPETIPALSREEFAEVFRSGLSAYENLQCRLVNHPHWILEILFPANEFLPQQVGEICAKALAEKRRSQQLSAETIPEILVLGGIKTTPPTSDSPDALQPGNWGVDVVETHSGETFLQAIAWDATIAQKPA |
1 | 3dxsX | 0.03 | 0.01 | 0.51 | 0.67 | DisCoVER | | MRKIQVGV-T---GMTCACSNSVEAALM-NV--NGVFKASVALLQNRADVVFDPNL-V----KEEDIKEEIEDA-----------GFEAEILA----------E--E--------------------------------- |
2 | 5a8rB | 0.08 | 0.06 | 0.78 | 1.00 | DEthreader | | DRSVAVNLGIEGRELPIVNAEAIAEKVKKLVQ-TSDDTNIRLINGQQILVQVPTTGVADYTVSALVTGAAVVQAIIDEFVDFDAAVKTVMLSTLIMHVAVEGLIGSVYSF------------------------------ |
3 | 2v0nA | 0.11 | 0.10 | 0.95 | 0.74 | CEthreader | | PVSALLIDIDFGHDIGDEVLREFALRLASNVR--AIDLPCRYGGEEFVVIMPDTALAD-ALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKAAHHHHHH---- |
4 | 6ad3A | 0.08 | 0.07 | 0.90 | 0.70 | EigenThreader | | NTMFMTG---------SIDAKRLSKALRAVLRRHGDTLRLVDFKDEHLFVVAYHRFVGDGSTTENIFVEASQLYGRERSRKHKATSDFIGLADTNRTN-----VDELAGMGFFALPLRFRNFDKVREAMQHLLERLGFEV |
5 | 1x3lA | 0.19 | 0.14 | 0.72 | 0.34 | HHpred | | VLIISDNLEASGPTVKDPTFEDVRLHIERGLEELPNVHNFLIASLGFKAYIMTTTLEGEAKDAGLFIGSIVQEIAERGRPF--EPPVVLVFGGETTVTIEGKG------------------------------------- |
6 | 6oxcA2 | 0.13 | 0.10 | 0.76 | 0.55 | MRFsearch | | --ILIAKM-------HDRGQKVIATAFADI-----GFDVDVGSLDVHVIGVSSLA--AGHLTLVPALRDALAQVGR--------PDIMIVVGGV----IPPGDFDELYA--AGATAIFPPVIADAAIDLLHRLAERL--- |
7 | 6j7nA1 | 0.13 | 0.09 | 0.64 | 0.40 | FFAS-3D | | ---------------PPTNLRSLRDRLTQ----------------------VAERQGVVFGRLQRHVAMIVVAQFAATLTDDTGAPLLLVKGGSSGIPDSRTSKD--------FATVARRDIELIHEQL--ADAGE---- |
8 | 6q6iA1 | 0.07 | 0.06 | 0.91 | 0.67 | SPARKS-K | | VLIVHRDIKADTVA--GERVRGIAHELEQDGFSILSTAASTHHGLAILVAAEGAGENQRLLQDVVELIRVAR--------VRAPQLPIFALGEQVTIENAPAESMADLHQ--LRGILYLFTVPFLARQVARAARNYLAGL |
9 | 2gfqA | 0.11 | 0.09 | 0.83 | 0.60 | CNFpred | | --------------------KLSLLKMSELNDLGWTVCYEAT-VPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGGHY---APKQTKRALEGDLAFGHILPKYAQPVSRDVMIKALNRFGEK |
10 | 5a8rB | 0.07 | 0.06 | 0.79 | 1.00 | DEthreader | | DSVAVNGISLRKVELPIVNAEAIAEKVKKLVQ-TSDDTNIRLINGQQILVQVPTTMGADYTVSALVTGAAVVQAIIDFDVDMFDAATVMALSTLIMHVAITR-----ALSL---------------------G--GIFF- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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