Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | EEIVNRVAQSKLVTFNLEDYYPKGERISFDLSHWLLEGFVLREKDFREQAKAHDWSQYRDAYVALYCSTDAIIPAWAYMLITSHLQEYAKKVIAGSLEDLESHLYQDVIEELDVSDLKDKPVIIKGCSNKPVPKNAYLFIINKLQPIVKSLMYGEACSSVPLYKQ |
1 | 3lk7A2 | 0.04 | 0.02 | 0.66 | 0.57 | DisCoVER | | -LQSLGKV-HGISFYDSKSTNNTKVILIAGGL--D----RG----NE--FDEL-IPDITGLKHVVLGE--------SASRVKRAAQKAGVTYSDAAVHKAYEVA------------Q-QGDVILLSPANASFE-VRGDEF------------ITFLRG------- |
2 | 4jcmA | 0.10 | 0.07 | 0.76 | 0.83 | DEthreader | | --------------------YAEEAVIDFVPNHTSGYFYYNQQSFIDKYLKESIQLWLGIDGIRVDAVAHM-P-LGWQKAFISSVYDYNPVTFGEWALDQDQVVYIGQVKISTVYFRTTLGGKA-----------YD--FQ--LL--TGKNVLNWDAIGVSVPAD |
3 | 2r6r11 | 0.09 | 0.07 | 0.73 | 0.51 | CEthreader | | ---------CKIKVIGVGGGGSNAVNRMYEDGI----------EGVELYAINTDVQHLSTLKV---------------PNKIQIGEKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAV----------- |
4 | 1j93A | 0.07 | 0.06 | 0.88 | 0.57 | EigenThreader | | QPLLLDAVRGKRPPVWLMRQAGAAVLGFVGAPFTLASYVVEGGHALLQKFATSMAKYIRAQAVQIFD---SWATELFSLPYLKQIVDSLPLILYASGSGVLFGEFITNRINDTVKKAGKGKHILNLGHGIKTPEENFAHFFEIAKG-------LRY--------- |
5 | 1orbA2 | 0.12 | 0.07 | 0.59 | 0.27 | HHpred | | -QVLENLESKRFQLVDSGRYLDSGGSVNMPFMNFLTEGFEKSPEELRAMFEAKKVD--LTKPLIATCRKGVTACHIALAAY-L--CGKPVAIYDGSWFEWFHRA------------------------------------------------------------- |
6 | 1v6sA | 0.16 | 0.13 | 0.82 | 0.38 | MRFsearch | | ---------------TLLDLDPKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLAPVGEALRAHLLSARYARLGEAFVLDAFPAYAGFLMEKEVRALSRLLKDPPYAVVLGG----AKVSDKIGVIESLLPRIDRLLIG----------- |
7 | 1ortL1 | 0.09 | 0.08 | 0.83 | 0.45 | FFAS-3D | | ------------------NMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQHLKRKNIALIFEKTSTRTRCAFEVAAYDQG--ANVTYIDPHKESMKDTARVLGRMYDLAKFAGVPVF-NGLTDEYHPTQMLADVLTMREHSIKAILVSTLAD------- |
8 | 1w78A2 | 0.10 | 0.07 | 0.70 | 0.60 | SPARKS-K | | ------------------LPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPK---NGRVLAVIGMKDI-------AGTLAWLKSVVDDWYCATAEQLLEHLVAQAWDAAMADAKAEDTVLVCGS----------FHTVAHVMEVIDARRS------------ |
9 | 1abeA | 0.09 | 0.07 | 0.77 | 0.59 | CNFpred | | --IVAKARGMKVIAVDDQFVMDTVPLVMMAATKIGERQ----GQELYKEMQKRGWD--KESAVMAITANELDTARRRTTGSMDALK-QIYQVPTKSDIPGAFDAANSMLVQHP-----VKHWLIVGM-----NDSTVLGGVRATEG------------------- |
10 | 2xdqB | 0.08 | 0.07 | 0.83 | 1.00 | DEthreader | | ---------------------SFKNVHGIMHAPIVDRH-VLARGSQEKVVDNIRKTEEHPDLIVLTPTCTSILQEDLQNFVRRASLSTADVLLADVAARTLEQIVQFYIDALGT-SKT-PTPSVNIIICAVIGGLTAQYLEREFG--Q--PSVRIPCIRAGVLAQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|