Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VALVESNANPKGVQLVSTYQTNRMGDPSDLVELAQQVQKADDFIRANACNRLTVIAEQIRMLQEQARRVLEEAKRDADLHHAACNVVKKPGNIYYLYQRESGQRYFSILSPKDWGPSCPHEFLAAYKLQHDMSWTPYENIEKRDAEISIIDKLLN |
1 | 5mpbM | 0.04 | 0.02 | 0.45 | 0.90 | DisCoVER | | ----------------------------------------------------------------------------KNN--------RQPYLVANVVEVMDKAAVVKTSSRQTVFLPMLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEK- |
2 | 6mzbB | 0.06 | 0.05 | 0.82 | 0.83 | DEthreader | | LWSAN--------TVRYLN--RKDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMNKLENRKDIAQDMVLYHRCDREEIQLLPTREDLG----------------VLPGPAKFDI-LECTELLVGIYVIPVRFLVSGFNVAQTMFTLLMTKDA- |
3 | 5o71A | 0.08 | 0.08 | 1.00 | 0.44 | CEthreader | | LEFASSKPVCTSPVDSVIHKPFTQSRIPPDLPMHPAPRHITEEELSVLESCLHRWRTEIENDTRDLQESISRIHRTIELMYSDKSMIQVPYRLHAVLVHEGGHYWAYIFDDSFGGYRNASAYCLMYINDKAQFLIQEEFNKEIETLPPDLRDFVE |
4 | 2azqA | 0.09 | 0.08 | 0.91 | 0.78 | EigenThreader | | NQVAGLDHAEGKPRFKQIILRVLQDTARLIEDLDEFWHAVDYLNRLGGRNGLLAAGLGIEHFLDLLQDAKDAEAIEGPLYVMDDGTVFDAGATVDLWHANTQNLRRRIITD----AEGPSAHVHFFISAFGHRHLTTQINFAGD----------K |
5 | 3kqgA | 0.14 | 0.09 | 0.63 | 0.25 | HHpred | | -----------------------------------------------DLEKASALNTKIRALQGSLENMSKLLKQNDILQVVSQGWKYFKGNFYYFSLIPRNSHLTSVTSESEQEFLGLIYWIGLTKAGMEGDWSWVDDTPFNKV---------- |
6 | 2d4yA | 0.11 | 0.08 | 0.79 | 0.50 | MRFsearch | | ---------------------------EGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQQLVSELNKIVGVEVSVQDGGTYNLTMANSTARQLAAVPSSA-----DPTRTTVAYVDEAAGNIEIPEKLDLDQTRNTLGQLAL |
7 | 3n4xA | 0.17 | 0.12 | 0.70 | 0.55 | FFAS-3D | | ----------------------------ENFVLSEKLDTKATEIKQ-LQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVRVHK------SYEDDSGLWFDISQ---GTHI------MDYKLVTEVIYAPVLK-QRSTEELYSLQSKL- |
8 | 6ezvX | 0.11 | 0.10 | 0.91 | 0.64 | SPARKS-K | | TVQQASQIMTALSSQVSGIEATVKGMNKELSDWGVKMQAAHDDLVNGATNIQKTLQTDIESMNNAIDNNRAAIEKLNKDLVYA-QVAVGVGI---------FMLVAGVALTVATAGTAAAVSGGIAAVGAAG----VTWGVLQNQIDDDYDSIAQ |
9 | 3d5tA | 0.13 | 0.08 | 0.65 | 0.49 | CNFpred | | -----------------------------LLKLINDDVWNRDTFIPTVGKRGAAIISSAASAANAAIDHVRDWVLGT-----------------------GKWVTMGIPSDGSYGI--EDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLA |
10 | 6mzbB | 0.09 | 0.08 | 0.87 | 0.83 | DEthreader | | RNGVA-----TKMKDV-VAV-IKPFDEQDEVLMESLTQFLGSVLNTDTYDKMNKLENRKDIAQDMVLYHVCDRE-EIQLILPTRERGELGKILK------------VLPGPAKFDFSLECTELLVKIVIPQEVVRFLVSGATAGHAIATEVMAMF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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