>PF10428 (500 residues) YFKRLSSMPRAMASKAIPPPVLMFIDATRGLLFALSQMHTALKQYIFFTLEERISMQFNR ILEVAGGSMAGLIRALDRFDSLSRNGNAEAGIVRAVLAACKDSISTFRRVASVLQLQLKP LQQTADVRYSRTFVMMLYGTIVELSNSWKSMSPHIEAVQPFLQHSEVLTIGDKRMDSALS PIAEGIPQSRPRHIANPSVTRPQRRRHAGSFSAKDVAQGALLNATATAPAHTETFDVDDM ERARKRGAGGRSRLGSDDISTGVMFEQDRPLATRSAEPRTSAFTIRQTPFMPELRQHDRK DSSSTAPMSALDVWHTPMSAVRTAPLQMQQKQSLTPLRRELASPLDDHLLELVDKVTMTS ASVWASLLGRSLDEDIAHFTSRDSQPSTPAAESQPPSLGSKLTELRGKSTQCDQLTGLLR STLQECRSAFQRLEDGAAHEECVARLWDESNRLVRLIVQISTLIKGISAEYSFQKELLGS LGALTASCTELMIHMHFLSP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YFKRLSSMPRAMASKAIPPPVLMFIDATRGLLFALSQMHTALKQYIFFTLEERISMQFNRILEVAGGSMAGLIRALDRFDSLSRNGNAEAGIVRAVLAACKDSISTFRRVASVLQLQLKPLQQTADVRYSRTFVMMLYGTIVELSNSWKSMSPHIEAVQPFLQHSEVLTIGDKRMDSALSPIAEGIPQSRPRHIANPSVTRPQRRRHAGSFSAKDVAQGALLNATATAPAHTETFDVDDMERARKRGAGGRSRLGSDDISTGVMFEQDRPLATRSAEPRTSAFTIRQTPFMPELRQHDRKDSSSTAPMSALDVWHTPMSAVRTAPLQMQQKQSLTPLRRELASPLDDHLLELVDKVTMTSASVWASLLGRSLDEDIAHFTSRDSQPSTPAAESQPPSLGSKLTELRGKSTQCDQLTGLLRSTLQECRSAFQRLEDGAAHEECVARLWDESNRLVRLIVQISTLIKGISAEYSFQKELLGSLGALTASCTELMIHMHFLSP | |||||||||||||||||||
1 | 5cwiA | 0.07 | 0.03 | 0.41 | 0.74 | DisCoVER | EAREARKAELRQHPDSQA--AR-DAQKLASQAEEAVKL---ACELAQEHPNADI---AKLCIKAASEAAEAASKAAELAQ---RHPDSQA-ARDAIKLASQAAEAVKLACELAQ------------EHP----------------------------------NADIAKLCIKAASEAAEAA-------------------------SKAAE----------LAQRHPDSQAARDAIK-L-----------ASQAAEAVKLACELAQEHPNADIAKKCIKAASEAAEEASKA----AEEAQPIASKAEEVKE--RCE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 6riwA | 0.05 | 0.03 | 0.65 | 0.67 | DEthreader | --------------------CGVIL-G--NL-SFPTKSSNQFMPLYHQVLTHYTAP-KKTHADNALVAGYPAALIAQLGGSHYLTGKANM--ML--AG-AV--S--AA-DP----------------MFVNMGFSI--A--FAGEG-AG-MM--VLKRQSDAVGDHIYAI-----KGGALS-D-----KGEFPNKGLVRAYIECHVKNLLAAGMPGMT-KAMLALGKG--L-IPAT-IN--LK--QPL---QSKNGYF---TGEQMPTT-------T-------VSWPTT-------R-TAGVS-VF-GF----GGSNAHL------FKVLLMQVDNAAKDG-L---VAVLVA--MG-MEL-ELHQYR-GRV-NLTTQIEDSLLQQGIN---LTNIAK-GVA-SIENITLRQLVGEGHFASGMASIIKTALD-SKHIAI-NG-LGRDNS-----------KLGGQLISNAIV---------------------------- | |||||||||||||
3 | 2lqgA | 0.09 | 0.02 | 0.27 | 0.59 | CEthreader | -------------GIDPFTLVQRLEHAAKQAAASATQTIAAAQHAASAPKASAGPPLLVQSCKAVAEQIPLLVQGVRGSQAQ----PDSPSAQLALIAASQSFLQPGGKMVAAAKASVPTI---QDQASAMQLSQCAKNLGTALAELRTAAQKAQEA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3d19A | 0.07 | 0.04 | 0.51 | 0.72 | EigenThreader | -DTGVTSVM-------------FVERSLNEIRFWSRIMKEHSFFLRLGFRCED--TQLIEEANQFYRLFEHIEQIAH------SYTNETD--PEQIKRFNAEVQQAATNIWGFKRKILGLILTPGQNNFPLLVDHTSREADYFRKRLIQLNEGK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDALPDAIIKENVFFLRIMADHAKFIGHLL-------------------DPSE--------RKLVDTARNFSNDFDELMYQAIDLESM----KPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIEQSIIHPLLADHVFREADRFLEIIDMYDVHL- | |||||||||||||
5 | 6gy6B | 0.10 | 0.06 | 0.59 | 0.31 | HHpred | ----------------YPEINIKAMNQAVNTIWLLAQ-----RQT-SGIINDKVSAYSREFDEMMRLTSDAAFQTIAQIDEALADPSLSKDDREALTLERNNLIQNLSKRTSKLTNKISDISDMVIAERLQDLVTQTESKRNKLDADREKIIESQDVIRQN------------------------------------------------NI--AD--MFKDFIPSAK-----------D-------------------I--D------------------------------------------GLDF-------T--Q---------P--------------KKE-AIKQAIKQGAEIARKILGKVSEGLKYIDLADA---------------RMKLSDQIDQLITETDELKAKIREVELRLSGLKDVM-------QIDTERTTLLTEAVKIEQVWISFAEQLHKLSNEIN-QQDLSNLINGQLDFLNNLTLQYNK--- | |||||||||||||
6 | 5ic0A | 0.10 | 0.06 | 0.62 | 0.57 | MRFsearch | ------------------CTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDGD-----FTEENRAQCRAATAPLLEAVDNLSAFAS--NPEFSSVQISPEGRAAMEPIVISAKTMLESAGG---LIQTARALAVNPR------------------------------------------------------------------DPPRWSVLAGHSRT-----------------------------------------------------------------------------------------------VSDSIKKLITSMRDECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEPLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGAAHTQEALEEAVQMMTEAVEDLTTTLNEAA- | |||||||||||||
7 | 5flzB | 0.08 | 0.06 | 0.77 | 0.92 | FFAS-3D | LFPFDHE--QIQIPSKIPNFESGLLHL----IFEAGLLYQSLGYKVEKFRMLNISPMKKALIIEISEELQNYTAFVNNLVS--SGTVVSLKSLYREIYENIIRLRIYCRFTETFLIELNIFKSHGDRKIATNLFNSMISLYYEYLMNW------------LTKGLLRATYGEFFIAENYHIPIEFNQERVPAFIPK-------------ELAYKIFMIGKSYIFLEKYCKEVQWTNEFSKKYHVLYQSNSYRGISTN----------------------------------------------------------------------------FFEIINDQYSEIVNHTNQILRDVVFALKNILYKLTRVLQEAVQLSSLRHLMNSPRNSSNVNRPFGRKEYLRIFNFLWRFKKNNYFYQKEMLKSND-----IIRINKLSRISILRTQFQQFNSKMESYYEMTRKLQRTLNITQPYPTSLVLLLNSVYEFVKVYCNLNS | |||||||||||||
8 | 6bfiA | 0.10 | 0.08 | 0.85 | 0.87 | SPARKS-K | AKGLGDSRQARALAHAAAVKLQELEQEIRKALAERVATDGPIKALEDAALASPRQANFAQKAKEFEAHTARLADTAELVASSGGCSDAVRKEAAKLRDISTAVVPAARVVLEAAKDYLRTVKEKWLAESMGRSVDGVIDSLEFMKVSEARIQADVKEAKRIALA----------------------------------EEDSMKLIAKASSVARQANRIQVAKVEADNSEN--PEFVAKLSSASESLAKS----------ISPMVIEAKAVVTSPQNKDIQRKFCSSADKVVEGVAAVRSVIEDNWVPPRPP-LPELLPAEMQEAEEMLRAPLPPKDQ----NPIHHAAASVFREADDLISLVKQMARKMAMMSKYTRGES------------------RSKADLIRMAKEIALNAQELLKLARQIANA-------CMDKRAKTNLLQLLIPTISTQLKILATVKATSADADATDMLVGNAENLMRTVKDVIRASEAACI | |||||||||||||
9 | 5ic1A | 0.12 | 0.08 | 0.65 | 1.12 | CNFpred | ---------------------AQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANLVKTIKALDGD-----FTEENRAQCRAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRAAMEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQL--------------CETAIAALNS--------------CLRDLDQASLAAV------------------------SQQLAPREGIS--------------------------------------------------------------QEALHTQMLTAVQEISHLIEPLASAA---------------------------RAEASQLGHKVSQMAQYFEPLTLAAVGAASKT-------LSHPQQMALLDQTKTLAESALQLLYTAKEAGGN-HTQYALYEAVYMMTEAVEDLTTTLNEAAS | |||||||||||||
10 | 6bcuA | 0.07 | 0.04 | 0.56 | 0.67 | DEthreader | LQRQVALWTLGQLVYPYKYPTLLEVLLNFLKTEQAIDWLEWLRRLSLEL-LKDSSPSLRSCWALAQAYNP--------------------------------M--ARDLFNAAFVSCWSLQQDELIRSIEALEVTQTLLNLAEF---------------------------------------------------------------------------------------------------------LGQWDSMEEYTCMIGYRAVLALHDLFSLAQ-------------------------------AMVSCHMLSELEIRQIWWERLQG-----LSRGNNLQDTWLQVIPALYPLTVASELIRAILWEMWGLELHLMEAQEWQALYHVFRISQLPTSKQRPLKGHEDLRQDERVMQLFGLVNTLLA--NDPTSLRKNL-SI--QRYAVIPGLIGWV---------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |