>PF10271 (430 residues) TGLSSPPLATQTVVPLRHCKIPELPVERSVLFELQLFFCHLVALFVHYINIYKTVWWYPP SHPPSHTSLNFHLIDFNVLTVTTIVLARRLIGAIVKEASQSGKVSLPRSVFLVITRFAVL TGTGWSLCRSIIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCDFRKTGLFSQVANIGPRET GEVNSRSRDYLTVLKETWKQHTRQMYGMEAMPTHACCLSPDLIRNEVEYLKMDFNWRMKE VLVSSMLSAYYVAFVPVWFVKNTQYYDKRWSCELFLLVSISTSVILMQYLLPARYCDLLH KAAAHLGCWQKVDPALCSNVLQHQWTEECMWPQGVLVKHSKNVYKAVGHYNVAVPSDVSH FRFHFFFSKPLRILNILILLEGAVIFYQLYSLISSEKWHQTISLALILFSNYYAFFKLLR DRLVLGKAYS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TGLSSPPLATQTVVPLRHCKIPELPVERSVLFELQLFFCHLVALFVHYINIYKTVWWYPPSHPPSHTSLNFHLIDFNVLTVTTIVLARRLIGAIVKEASQSGKVSLPRSVFLVITRFAVLTGTGWSLCRSIIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCDFRKTGLFSQVANIGPRETGEVNSRSRDYLTVLKETWKQHTRQMYGMEAMPTHACCLSPDLIRNEVEYLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTQYYDKRWSCELFLLVSISTSVILMQYLLPARYCDLLHKAAAHLGCWQKVDPALCSNVLQHQWTEECMWPQGVLVKHSKNVYKAVGHYNVAVPSDVSHFRFHFFFSKPLRILNILILLEGAVIFYQLYSLISSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS | |||||||||||||||||||
1 | 6bd4A | 0.04 | 0.03 | 0.67 | 0.67 | DisCoVER | ------------------------------------------------GTNS-DQYIWVKRSLNCVLKCAGLYKTDIWMAVWASLCFI-STAFTVLTFLIDRFSYPERPIIFLSMC-YNIYSIAYIVRLRERISCDEAEPVLIQEGLCAIIFLLLYFFGMA--------------------------------S-----------SIWWVILTLTWFLAA--GLHSSYFHIAA-WAIPAVKTIVILIMR---LVD-ADE------LT---GLC--YVGNQNLDALTGFVVLFTYLVIGTLFIAAGLVALFMKKYT--CTVCGYIYNPEDGD-PDNGVNPGTDFWVCPLCGVGKDQFE----EVEEDKLERLMVKIGVFSFMSLLVGI-TSGMWIWSAKTLHTWQKFYNR--------------------- | |||||||||||||
2 | 4zhjA | 0.03 | 0.02 | 0.63 | 0.67 | DEthreader | ------------LQAIPDGAIEITVFSKGNVGTAAYLDVFGSIYEVMKGLQNGYDNDA--------------------------SYLTPPAE-A--------D-RKLMEIESRLLPCGL----QPPSAE-------------------EA--IATL-VNIASLDREDWTNMEEIYR---K-ILADVELLQDITLATYNVNEKLKPL-------------------------FEYLEFCLEQV-CA---D--NEFGGLLQALEGEYV--L---P--G--GG--IR---V--TGKNIHA--LD-PQSIPTLAQSKV--D----TYESAQWMVGAKIELRIDV--------NQMLLFQNYSDPAYIRTLSETVRLDARTKLLNPKWYEGML-SHG------------YEGVRELSKRLVYDANSTKNYWET-- | |||||||||||||
3 | 4n6hA | 0.06 | 0.06 | 0.91 | 0.66 | CEthreader | -----------DLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGK-------------------VKEAQAAAEQLKTTRNAYIQKYLGSPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKM-----KTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVC--HPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDE | |||||||||||||
4 | 2pfvA | 0.05 | 0.05 | 0.86 | 0.83 | EigenThreader | SGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNPQINITKQQLGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAK---------EYEKG------SSGMNSYTEALLGFIANEKSLVDDLYSQHVLSQILSPLISAYAKLFGANLKIVRSNLVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSTEATVDTMSRLRKFSEYKNGCLGAM----------------DNITREN------------------------WLLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQR--IGFFI---LMNLTLVEQIVEKLNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIFNEGFEDLVSKTKLKVTLKSEIISLVM | |||||||||||||
5 | 6p25B | 0.13 | 0.11 | 0.84 | 0.36 | HHpred | ---VHPPLGKAGYNG--SWDFPS-GEPDYVKMRLFNASFSALCVP----LAYFTAKAIGFSL--PTVWLRFILLDSMLLFFTVASF-----FSFVMFHNQRSKPFKWWKWLTISVKMVGLFIITMVGIYTVIDLWTNHWLARIFGIIVPFCIFLLCFKIHFDLLSHSGTGLFSLLHSHIQTQQCYGYKD----ANNEWFFNERGLPGTSYRLVHSGYGDNKDNVEKLHTLTTSF--RIKNLE----MGCYLANSLPEGFRQQWWNIETHENDQYPKTNFLK------------DFIH-LNLAMMATN--NALVPD---PDKFDYLASAWQWPTLNGLRLCG----W-GD---------DN-PKYFLLGTPASTWASSVAVLAFMATVVILLIRWQSNWNVGFYPLLAWGLHYMPFVIMSRVTY------- | |||||||||||||
6 | 5e1jA1 | 0.10 | 0.07 | 0.67 | 0.47 | MRFsearch | ----------------------------YFIFTRLDLIWSLNYFALLFLNFFEQPLWCEKNPKPSCKDRDYYYLTNAESIIYEVITLAILLVHTFFPISYEG-SRIFWTSRLNLVKVACVVILFVDVLVDF-------LYFRIAPYVRVIIFILS----------------------------------------------------------------IRELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDGLTVFTSYGATLYQMFIFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQV-------------------------------------------SGQRYRAFIATFITLIPSLMPYLGTIFCVLCIYTLFNLLVMGNWQVWMWWSITYFVSFYVITILLLLNLVVAFVLE | |||||||||||||
7 | 3aqpA2 | 0.08 | 0.07 | 0.85 | 0.85 | FFAS-3D | ---------------------------QDAIQAGIRSALIGTLAIFLLIFAYYG-PHLG---LVASLGLLYTSLTLPGIAGLVLTLGAALSFERIKEELRAGKKQAIPEGFRHSTLTIMDVNIAHLLAAAALYQVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTAATLLLAALAAGVVFAKGFNYRAEPNVEVETLRRRLELERLFIGEELRRNAVMAVLVGLGLILLYVAFRFD--WTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTI----------------------------VGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSI---NQTLSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKN | |||||||||||||
8 | 5mz61 | 0.12 | 0.10 | 0.83 | 0.81 | SPARKS-K | KMFITWQTLRKEAMECRSKDREIFASIPAKLCFFYFYLCRAVVCLLDYIDLSD---------------------DTLAKEAALRWLMFLGETELIEKKLKTWKMDKSSKDMFSATEFAMNYLKMLEKLMKLRDKVKSFSRYELASYVSWLCSTLSNVPVGSALRECEFPDRVSHIQE--------AALKSDSLVRNRIPGLASSQFDNSVNASIWPFEDSNYYVHIGSTIAWHFEMRRECALVDSMSAMILNLRVALKSA-----------SFFRVLQTTNTLAYYSSIIEEAKNAKLMRVSCVNLLS---------SNP-------------------IVCNVCTIYPLH-------SSFAAEYMMSYQVLMHIIQNEIFGMCVIRWLTKKLDSKDTMEIFNNALKIVDMILAVTQLGRQLEFPMECNY | |||||||||||||
9 | 3rkoB | 0.11 | 0.08 | 0.72 | 1.45 | CNFpred | ---------------------------ENVSAIVGVGSVGLAALVTAFIGVD-LWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRG-----EEGYSRFFAYTNLFIASMVVLVLADNLLLMY-------LGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVT---------VGDVFLAFALFILYNE-------------LGTLNFREMVELAPAHF-MLMWATLMLLGGAVGKSALQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAV---------------------------------------------------TLLLAGFAALVQDIKRVLAYSTMSQIGYMFLALGVQ------AWDAAIFHLMTHAFFKALLFLASGSVILACHH | |||||||||||||
10 | 6z16A | 0.07 | 0.05 | 0.66 | 0.67 | DEthreader | -----------------------GLSLLFALLITGIGSLVVLYSIYYL---Q------------------KGK-EPL-GNFYVY-LLLFMGAMLGVVLS--D-----HLIALYMFWELTSISSFLLIAYWF--K-------RDRSRYGAQKSMLITMFGGLLMLGGFVALAIAGGTY--------------LTEHPLFIPALVILIALTPIFA--------S-VWVWTVALVGLVTLAYSTVLAFKGSLFMVVGIVD--H----ETGTRDRLLM-TFIALIGSLSMANGLSKEMFFTAMLRAKDVA--------------------------------------------GWAV-----I-LPVVAW-VASIFTFLYSALLVSRTFFGTYL-KEAHEAPFGMLIAPIVLASLVVFIVPVLSDSVLAPNED | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |