Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | NPNRVTKKATQKLSAIKLDDGPGSEGGKGGAPKPELSRREREQIEKQKARQRYEKLHAAGKTTEAKADLARLALIRQQREEAAAKREAEKK |
1 | 6obiA | 0.00 | 0.00 | 0.01 | 1.36 | DisCoVER | | ---------------------------------------------------I--------------------------------------- |
2 | 4kf7A | 0.08 | 0.08 | 0.92 | 1.00 | DEthreader | | M--LTRDGYVHQLLREPTKFAPNPELNLEEVDLIAE---LLM-PHSLVAAISLKL-LYNLMWSLILHQMHVGYQERAERRDLLQNQRAQAG |
3 | 4gfqA | 0.11 | 0.11 | 1.00 | 0.54 | CEthreader | | YDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTAKVAVRNVRRDGNDDLKKLEKAGEIDDLRGYTEDIQKETDKYIAKVDEIAKNKE |
4 | 5xxbC | 0.08 | 0.08 | 1.00 | 0.45 | EigenThreader | | VSKTREAVKILETLGCTAELERVRASRRGPIPGVSAFKRLQLLFGEIQRLKILARLAQTEGTKQRALVLRKKQANREEHKKHRQSARRFAA |
5 | 4lgwA | 0.21 | 0.13 | 0.63 | 0.25 | HHpred | | ----------MALMRLN--------DEIVMTPEMNFSKREKEIL----------RWTAEGKTSAEIAMILSISTVNFHQKNMQKK------ |
6 | 2i1kA | 0.19 | 0.14 | 0.76 | 0.37 | MRFsearch | | --AQAREEKLAKQAQ------------------REIAARERAEKKQQEYQDRLRQMQEE--MERSQANLLEAQDMILRLEEQLRQLQAAKE |
7 | 3jctu | 0.21 | 0.21 | 1.00 | 0.64 | FFAS-3D | | NPRKLKWKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRARIEEIRQKRERAFYKNRMRGNKEKDFLRDKKLVELLRIREVEIARKLAKEQE |
8 | 5nrlN | 0.05 | 0.04 | 0.82 | 0.97 | SPARKS-K | | ----------------PRPLFMKKKANDDARVLQTKKENMIKNIDKANQVAKNYEKQCLLDSEKERQKWFERQNERKQKHRRIQLAKQRES |
9 | 3frtA | 0.11 | 0.09 | 0.79 | 0.46 | CNFpred | | LVNEWSLKIRKEMRVVD-------------------RQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNS |
10 | 5owvC2 | 0.03 | 0.02 | 0.87 | 1.00 | DEthreader | | -GSHQILLFIKAYENYSVSFDRQEKEENEL--L-IL-D--QL-VG-IFDRLLNQFQSY-E-K-HLLLAYENFLKEIEILNHQILEQLKSIS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|