Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | RALGYPRLISMENFRTPNFPLVAEVLIWLVKRYEPNADLPMDVDTEQDRVIFIKSVAQFMATKAHIKLNTKKLYQADGYAVKELLKVTAMLYNAMKTNTGQQEEEQEEETTAMSFDISSRIADLKASRQLASEITTKGASLYDLLGREVELREQRSVAINKPLEINEIEKHLKVSIRAVEQEIKKTEHMLNNVASDEANLDAKISKKKLELERNRKRLQTLQSVRPAFMDEYERLEEDLQKQYESYLQKFRNLGYLEQQLEEHNRAEQD |
1 | 1rt8A | 0.05 | 0.04 | 0.88 | 1.15 | EigenThreader | | SRVPINTETFEFFDQCKDGLILSKLINDSV----PDTIDERVLNKQFKCIENNNVVINSAKAMGGISIGAGDILEGREHLILGLVWQIIRRGLLKAANFSKDVSDTAMVAGNPKLNLAFVAHLFNTHILLQAYDKITFKAVENCNYAVDLGKNQADITDGSRTLTLALVWQMMRMNITKTLDMVAWANSMAAFVLDVLHGIKELAIQNARLAISIARKLEDIVAVRPRLVLHFIGSLMAV----------------------------- |
2 | 5xg2A | 0.15 | 0.13 | 0.84 | 1.12 | FFAS-3D | | ---------AIVRWGKRKEKLIEE----IRAREEERNALVVRLGEIDRTFAVAREEFDTVVARKSLYEGEARIKRAEE----EKERLKAEILTGEAR----------------LPGLRERAENLRLVEEKRAEISELERRLSSITSQSFELRIKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALEN--PEARELTEKIRAVEKEIAALREELSRVEGKLEG------- |
3 | 6fpdA | 0.09 | 0.03 | 0.33 | 0.64 | DisCoVER | | FPFAHEDVVTVDDVRTLSAGRTSATGVSRITDFLNAIAKSKPVDGFPATRRLDGIWNTSSTDAANFSPAK-AGYKKVQEALRAYASSITKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 1sjjA | 0.08 | 0.06 | 0.75 | 0.83 | DEthreader | | -SVEETSAKE---G------LL-LWYQRKTA---PYKNVNI-Q--N--FHISWKD-GLGFCAIHTAFADADIDEKAIMTYVSSFYH--AFSGAQKAETAANRI--TKLRLSNRPAFMPSEGMVSDINNAWG-G-------------------------------LE-QAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKE--AMLQQKDY--ET-A---TLSEIKALLKKHEAFESDLA---AHQDRVEQIAAIAQELEL |
5 | 5td8A | 0.10 | 0.09 | 0.86 | 0.44 | CEthreader | | FDIETNHPISIKFLKQPTQKGFIIIFKWLYLRLDPGYGFTKSIENE------IYQILKNLRYPFLESINKSQISAVGGSNWHKFLGMLHWMVRTNIK------LDMCLNKVDRSLINQNTQTLDEQDQRQERYELMVEKLLIDYFTESYKSFLKLED--NYEPSMQELKLGFEKFVHIINTDVTSTELKLEELKVDLNRKRYKLHQQVIHVIDITSKFKINIQSSLENSENELGNVIEELRNLE------------------------- |
6 | 1pxyB | 0.09 | 0.09 | 0.97 | 1.12 | EigenThreader | | QFLPLDPHSNQLYELVKDGVLLCKLINVAV----PGTIDERAILNPWERNENHTLCLNSAKA---VGIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLLRLPPEKVLLKWMNFHLKKGDLKDLERAELVLSHAERMFVAQIFHTCRDERCYRLWINSLVNNVFEDILLEVLDKVSFRKVENCNQVIKIGKQLKLILGLLWQLMRFHMLQLLKSADILSWANRKVRTMGFFLNLLWAVEDEKRLNATYIVSVARKLGLILTASIMYWSL |
7 | 5td8A | 0.14 | 0.12 | 0.81 | 0.56 | HHpred | | KKNKFDHPISIKFLKQPTQKGFIIIFKWLYLRLDPGYGFTK--SIENEIYQILKN------LRYPFSINKSQISAVGGSNWHKFLGMLHWMVRTNIKLDMCLNKVDQNTQTLDEQDRQERY-EL-MVEKLLIDYFT----------------ESYKSFLKLEDNYEPSMQELKLGFEKFV---HIINTDVTSTELKLE-------ELKVDLNRKRYKLH-----------QQVIHVIDITSKFKINIQSS--LENSENELGNVIEELR- |
8 | 6yvuA | 0.14 | 0.12 | 0.87 | 0.43 | MRFsearch | | -------------------NLSLHKLDLAKRNLDAN-----PSSQIIARNEEILRDIGECENEIKTK----------QMSLKKCQEEVSTIEKDMKEYDSSKLNELKKELKLLAKELEEQESESERTEQLSSELDSNKTLLHNHLKSIESLKLENSDLEGKIRGVEDDLVTVQTELNEEKKRLMDIDDELNELETLIKKKQDEKKSSELELQKLVHDLNKYKSNNPNIMNMIENVEKKEAALKTMIKTIEKDKMKIQETISKLNEYKRE |
9 | 6djlB | 0.13 | 0.09 | 0.74 | 1.09 | FFAS-3D | | ---------------------------------DPR------IQGELEKLQSTDDINRRETELEDARQKFRSVLVEATVKLDELVKKSKPYWEAR-----------------------RVARQAQLEAQKATQDFQRATEVLRAAKETISLAEQRLLE----DDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLRAINKSKPYFKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERR----- |
10 | 4ci6B2 | 0.15 | 0.12 | 0.82 | 0.79 | SPARKS-K | | ---------------------------------------VRRI-TPYYLRELSDLLRTHLSSAATKQLDM-------GVVLSDLDTMLVALDKAERE-GGVDKDQLKSFNSLILYILSIVEPSLQRIQKHLFSDIGSLMRAHKHLETLLEVLVTLSQQGQPVSETYSFLNRLAEAKVTLSQQLNTLQQQQESAKAQLSILINRSDVARQSLQRFDHAAITLQEVS-EFTDDMRNFTADSIPLLIQLVEQREKLRELTTIAERLNRLERE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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