Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MLYILDQRLRAQNIPGDKARRDEWTEVDRKRVLHDIILTMFNKSFIEELLKPQELYSKKALRTIYDRLAHASIMKLNQASMDKLYDLMTMALKYQVLLCPRPKDVLLVTFNHLDTIKGLIQDNPALLHLVDETLRQLIEVYGGLSAGEFQLIRQTLLTFFQDLHIRVSLFLKDKVQNSNGRFV |
1 | 2icfB1 | 0.06 | 0.04 | 0.63 | 0.61 | DisCoVER | | MMTPTV-----------IAHYLLEKRQGALELIKKGYTQQRQS--S---A-----------------------------------------F--AAFVKRAP--STWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKGVF---QED-AP--VIHQTVAINRWEDPGKQLYNVEATSYA- |
2 | 2ipcA3 | 0.06 | 0.04 | 0.76 | 0.83 | DEthreader | | ----------------------------TVEEK--NR-SVHLTLI-EGLFSPENMEL--AHMLIQAIRAKELYHDYVVIIRRYGEGLH-Q--VI-AQRLEVKEAAIGMVEETVASLAENFLDWDLEGLKATLDTAPALAYEAREMRAVERFVILNVVDNAWKELNLLIEATRLFNE-----I- |
3 | 5h5mA | 0.09 | 0.09 | 1.00 | 0.54 | CEthreader | | DRPDLEGHCERISGSASIADAESTRENRKQKIVAECNNLRQALQELLTEYSTGRRDDIPLGIAEVHKRTKDLRRHLRRAIVDHISDATPLILLIEAAKEGHEENTRYRSKMFQEHANEIVSTAAQLEKLAPQVAQAAILLCHQPTSKTAQENMETYKNAWFDKVRLLTTALDNITTLDDFLAV |
4 | 5vl9A | 0.09 | 0.07 | 0.76 | 0.62 | EigenThreader | | GYLNREERRETIQAARNIATAAGVAAGQVHHHFGELKSQAFIRVIREDLQRLSR--------------------------------------------TAGWREQLFSALGSLWRQAQLLADDPEIKSAYLLTHDEAVRIIRAGHAAGEFTLENIAWRLISLVCGLDGIYVLGPEVDDAAFTR |
5 | 1vt4I | 0.19 | 0.14 | 0.74 | 0.46 | HHpred | | -----------------------------QYQYKDILS-VFEDAFVDNFDMPKSILSKEEIDHIISKDAVSGTLRLFWTLLSKQEE---MVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMIEQRDRLYNKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------- |
6 | 6tnfA | 0.10 | 0.09 | 0.88 | 0.40 | MRFsearch | | --KKLRVALEKHP----------SYPGVVNEFISGLESHIKDRSQFKNCLLPCTILQPAVVTLLLEKIPEFNFPRLSQDLVKKLMQMLSVPIQHDIIT--SLPEILEQQNEVARELSCLLKQGRRLAELLAKVRQSAMTIVPSVKLEDLPVVIKFILHNVAADAVEVISDLRKSL-------- |
7 | 6whbA1 | 0.14 | 0.11 | 0.77 | 0.77 | FFAS-3D | | --------------------------PAYKDLAEPWIQ-VFGMELVGCLFSRNWNVREMALRRLSHDVSGALLLANSGDVVEACCSVLSMVCA------DPVYKVYVAALKTLRAMLVYTPCHIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLELCKGQAGELAV----------GREI |
8 | 5cwfA | 0.12 | 0.10 | 0.89 | 0.78 | SPARKS-K | | MSDEMKKVMEALKKAVELAKKNNDDAREIERAAKEIVEALREAKVMLALAKAVLLNNDDEVAREIARAAAEIVEALRENNSDEMAKVMLALAKAVLLAANNDDEVAREIARAAAEIVEALRESDEMAKKMLELAKRVLDAAKNNDDETAREIARQAAEEVEAD-------------------- |
9 | 3w3tA | 0.05 | 0.04 | 0.85 | 0.68 | CNFpred | | --VYVKEVMEEIALPSLDFYLHDGVRAAGATLIPILLSCLLLVLLWHKASSKL-EPMPEITQVYHNSLVNGIKV-LSEDQLAAFTKGVSANLTDTYERM-TDEDLLDEINKSIAAVLKTTNG--HYLKNLENIWPMINTFLLDNEPILVIFALVVIGDLIQY--------------------- |
10 | 3n3dA | 0.06 | 0.05 | 0.79 | 0.83 | DEthreader | | -LSG-KLLRPGYFYFSP-QLQAGAA-AIEILHVGTLHDLQGELHQMDLNYRED-ITL-DAYLNEIAGKTAELFALYRDIGIAIGCAYQMLDDILDYAGDPKRTQ--KPVL--E-------------------DLRSGVKKQAMTDKHVQALVAYDGVGAAKQLQDYTRLLLR--R-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|