Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | TARVILVLDASGSMSFLYSKGIVADVVERMAAVAAQLDDDGEMQAWTFASHPARLPDLTIGDLPDWLRLHVRVGEVGLFYRPGKRKKGLRDDQIDMRSVGIQNEEQKVIAQVRAYVRENPTAAPTLVLFFSDGGVYRNTEIERELRDAVEEPIFWQFVGLGQSNYGVLERFDTLPGRRVDNVGFFAVDDISTVPDPELYDRLLSEFPDWMTAARQAGIL |
1 | 4cn8A | 0.13 | 0.11 | 0.84 | 1.17 | DEthreader | | QADIIVLFDDSSSIQYDNK-ENYQMMKDFVKELVDSFTVGSQFGVVQFSQGVKTAFPLNFKTKEDIKKGIQ-D------------------MVPRN--G-GQTEIGTGLKHVRESFSGGGPDKQKIVILMTDGKSNAGAPPQHEAHKLKAEGVTVIAIGIGQGVKTELEQIA------TMKNYVLTTNSFSELST--LLKLVIDLACE--VCVVDMSC- |
2 | 6k82B | 0.17 | 0.15 | 0.90 | 2.23 | HHpred | | SSNLIVGIDFTKSNEWLHTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDFYCNGFEEVLARYREIVP-----------------Q---LKLAGPTSFAPIIEMAMTVVEQS-SGQYHVLVIIADGQVTQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFANIPARAFDNFQFVNFTEIMSKKETEFALSALMAIPPQYKATIELNLL |
3 | 6snkA | 0.13 | 0.10 | 0.79 | 0.68 | DisCoVER | | KADIVFLLDGSINF--RR--DSFQEVLRFVSEIVDTVYDSIQVGLVQYNSDPTDEFFLKFSTKRQII-DAI-------NKV-----------VY-K--GGRHANTKVGLEHLRNHFVPSRLDVPQIAFVITGGKSVED--AQDVSLALTQRGVKVFAVGVRNIDSEEVGKI--A----SNSATAFRVGNVQEL-S-ELSEQVLETLHDAM--------- |
4 | 4hqlA1 | 0.15 | 0.13 | 0.85 | 0.33 | MRFsearch | | --DLYLLVDGSGSIGYP---NWITKVIPMLNGLINSLSDTINLYMNLFGSYTTELIRGQSIDKRQALSKVTELRK--------------------TYTPYGTTSMTAALDEVQKHLNDRREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQINHQFNRLIAGCR-PREPNCKFYSYADWNEA--VALIKPFIAKVCTEVERVA----- |
5 | 4wfqA | 0.14 | 0.12 | 0.84 | 1.10 | SPARKS-K | | IRSLILTLDCSEAMLEDLRPNRHAMIIQYAIDFVHEFNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRK---------------------QEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPDIHQTIDSLVSEKIRVKVLGLSAQV-AICKELCKATNYGDESF-YKILLD------ETHLKELFNEAVTPLPV------- |
6 | 1auqA | 0.12 | 0.10 | 0.82 | 0.68 | MAPalign | | LLDLVFLLDGSSRL----SEAEFEVLKAFVVDMMERLQKWVRVAVVEYHDGSHAYIGLKDRRPSELRRIASQVK-----------------------YAGSVASTSEVLKYTLFIFIDR-PEASRIALLLMASQEPMSRNFVRYVQGLKKKKVIVIPVGIGPHALKQIRLIEKQ----APENKAFVLSSVDEL--EQQRDEIVSYLCDLAPEA------ |
7 | 6snkA | 0.12 | 0.10 | 0.80 | 0.52 | CEthreader | | KADIVFLLDGSINFR----RDSFQEVLRFVSEIVDTVYDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVY---------------------KGGRHANTKVGLEHLRVNHFVPEAGVPQIAFVITGGKSVE--DAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSA------TAFRVGNVQE--LSELSEQVLETLHDAMH-------- |
8 | 4hqlA | 0.16 | 0.15 | 0.89 | 0.80 | MUSTER | | QVDLYLLVDGSGSIGY---PNWITKVIPMLNGLINSLRDTINLYMNLFGSYTTELIRLGSGQSID------KRQALSKVTELRKT-----------YTPYGTTSMTAALDEVQKHLNDNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGNHQFNRLIAGCRPRE-PNCKFYSYADWNE--AVALIKPFIAKVCTEVERVANCGPW |
9 | 6k82B | 0.16 | 0.15 | 0.90 | 1.65 | HHsearch | | SSNLIVGIDFTKSNEWTGTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHVFSFYPNGFEEVLARYRE-----------------IVPQL---KLAGPTSFAPIIEMAMTVVEQS-SGQYHVLVIIADGQVTREQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFANIPARAFDNFQFVNFTEIMSRKETEFALSALMAIPPQYKATIELNLL |
10 | 6kxkA2 | 0.18 | 0.16 | 0.89 | 1.53 | FFAS-3D | | -LNFMVAIDFTASIDPSGRLNAYQRAIMDVGEVLQFYDSDKRFPAWGFGARPIDAPVSHCDGIQGIMTSYTSA-------------------LFNVSLAGPTLFGPVINAAAMSASLAQGSRKYYVLLIITDGVITDLQETKDALVSASDLPLSILIVGVGGADFKEMEILDADKGERRDIVQFVALRDVQY-GEISVVQALLAELPSQFLTYMRIR-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|