>PF10134 (228 residues) KNDLASMEHPLFSLGTRPDRRILTYEHNGAEITVTPSVKGLATIHDKDILIFCVSQLMAA LNAGRQVSRTLHLTAHDLLVACNRETSGDAYRRLREAFERLAGTRITTNITTGGQEVTSG FGLIDSWEIVRKARGGRMVSVAVTLSDWLYRAVLSKSVLTLSRDYFRLRKPLERRIYELA RKHCGRQDSWQISVETLLKKSGSASPRRVFRKMIRDMIEAQPLPDYEL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KNDLASMEHPLFSLGTRPDRRILTYEHNGAEITVTPSVKGLATIHDKDILIFCVSQLMAALNAGRQVSRTLHLTAHDLLVACNRETSGDAYRRLREAFERLAGTRITTNITTGGQEVTSGFGLIDSWEIVRKARGGRMVSVAVTLSDWLYRAVLSKSVLTLSRDYFRLRKPLERRIYELARKHCGRQDSWQISVETLLKKSGSASPRRVFRKMIRDMIEAQPLPDYEL | |||||||||||||||||||
1 | 5ubfA | 0.12 | 0.11 | 0.88 | 1.17 | DEthreader | --A-GIIDQALAP--PRTRKYQKSVSIGTRAVIETRSSKNITVD-DLT-LFALFTLTVQYH-D----N-KTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHEGRWLGFKSDRFRFLARTITASEEAPIKPNLYILVWEPSFFEELLTRYFFLFPPEILKQHT-LVFQLYSYFRSRSR-RHT----E--QK--L-ARN---IEWRRFSDLIRELLLWGYLD | |||||||||||||
2 | 5ubfA | 0.12 | 0.11 | 0.90 | 1.00 | DEthreader | ---A--GIIDQALAPPRTRKQKSVSISTRAVIETRSSKNITVD--DL-TLFALFTLTVQYH-D----N-KTPLYITDILSLRGKKDSGPARDSIRDSIDRIEF-TDFQLHELSG-KSDRFR-FLARTITASEEAPVKPNLYILVWEPSFFEELTRDYFFLFPPEILKQ-HTLVFQLYSYFRSR--SRRHTDVLSELNQKLARNIEW-RRF-SDLIRELRRLVLWGYHD | |||||||||||||
3 | 5ubfA | 0.14 | 0.13 | 0.90 | 1.37 | HHpred | -GIIDQALAPP-RTRKSY-QK-SV-SISGTRAVIETSSKNI-TVDDL-TLFALFTLTVQY-HD-----NKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELTGSEFKSDRFRFLARTITASEEADGKPNLYILVWEPSFFEELLTDYFFLFPPEILKQ-HTLVFQLYSYFRSRS-RR--HTDVLSELNQKLARNIEWRRFS-DLIRELRRLSE----- | |||||||||||||
4 | 2nraC | 0.17 | 0.14 | 0.82 | 1.38 | DisCoVER | KIRH-RNELNHTLAQ--------------------------LPLPAKRVMYMALALID--SK---EPLRVFKIRAEDLAALAKITPS-LAYRQLKEGGKLLGASKISLRGDDELNSEELDLNIIEWIAYS-----PDEGYLSLKFTRTIEPYISSIFTTQLLTASLRLSSQYSSSLYQLIRKHYSKKNYFIISVDELKEELIAYYDFPIFKRVLNKAI---EITEIF- | |||||||||||||
5 | 2z9oA | 0.13 | 0.10 | 0.75 | 1.20 | MRFsearch | ------------------------------------------SRDQKRMLYLFVDQIRD---------GICEIHVAKYAEIFGL-TSAEASKDIRQALKSFAGKEVVFYRPEEDEKGYESFPWFIKRAHSPS-----RGLYSVHINPYLIPFFIGLRFTQFRSETKEITNPYAMRLYESLCQYRKPSGIVSLKIDWIIERYQLPQSMPDFRRRFLQVNEINSRTPMRL | |||||||||||||
6 | 5ubfA | 0.13 | 0.12 | 0.93 | 1.41 | SPARKS-K | ----AGIIDQALAPPRTRKSYQKSVSISGTRAVIETRSSKNITVDDL-TLFALFTLTVQYH------DNKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELTPEGFKSDRFRFLARTITASEEAPIKPNLYILVWEPSFFEELLTRDFFLFPPEILKQ-HTLVFQLYSYFRSRSRRH---TDVLSELNQKLARNIEWRRFSD-LIRELRRLNLWGYHL | |||||||||||||
7 | 5ubfA | 0.13 | 0.12 | 0.91 | 1.61 | MAPalign | -------IDQALAPPRTRKSYQKSVSIGTRAVIETRSS-KNITVDDL-TLFALFTLTVQYH------DNKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELNPEGFKSDRFRFLARTITASEEIRIKPNLYILVWEPSFFEELLRDYFFLFPPEILKQ-HTLVFQLYSYFRS---RSRRHTDVLSELNQKLARNIEWRRFS-DLIRELRRVNLWGYHL | |||||||||||||
8 | 5ubfA | 0.13 | 0.12 | 0.94 | 1.41 | CEthreader | ----AGIIDQALAPPRTRKSYQKSVSISGTRAVIETRSSKNITVDDL-TLFALFTLTVQYHD------NKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHEENPEGFKSDRFRFLARTITASEEAPVKPNLYILVWEPSFFEELLTRDYFFLFPPEILKQHTLVFQLYSYFRSRS---RRHTDVLSELNQKLARNIEWRRFSDLIRELRRLSEGKGSED | |||||||||||||
9 | 2z9oA | 0.12 | 0.09 | 0.79 | 1.05 | MUSTER | ----------------------------SNDL-TEAA-YSL-SRDQKRMLYLFVDQIR---------DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRDAGDEKGYESFPWFIKRAHSPSRG-----LYSVHINPYLIPFFIGLRFTQFRSETKEITNPYAMRLYESLCQYRKPDGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQV-SRTPMRL | |||||||||||||
10 | 2z9oA | 0.13 | 0.11 | 0.80 | 3.50 | HHsearch | --------------------------SND----LTEAAYSL-SRDQKRMLYLFVDQIR---------DGICEIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEDEKGYESFPWFIKRAHSPSR-----GLYSVHINPYLIPFFIGNRFTQFRLSTKEITNPYAMRLYESLCQYRKPSGIVSLKIDWIIERYQLPQRMPDFRRRFLQCVEINSRTPMRL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |