>PF10086 (223 residues) AFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHLYVLQVNEVTKEAMQHPL WYGIYGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIV YAFAINSGTFEQLLVNDDVKQALLPIQEQLLHTPSYEWLLGGIERISAIAVQIGLSLLVL YAVKSRRPLFLLYSILLHALFNVPAVLYQRGIVEHAAAVEIIV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | AFLLPIGLIVWFKRKYGASLKVFFIGALTFFVFAQLLEGGVHLYVLQVNEVTKEAMQHPLWYGIYGCLMAGIFEECGRYLMMRFFMKRHHTWADGLAFGAGHGGLEAILITGLSSISLIVYAFAINSGTFEQLLVNDDVKQALLPIQEQLLHTPSYEWLLGGIERISAIAVQIGLSLLVLYAVKSRRPLFLLYSILLHALFNVPAVLYQRGIVEHAAAVEIIV | |||||||||||||||||||
1 | 5a63C | 0.14 | 0.12 | 0.85 | 1.17 | DEthreader | TFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLL-LASVVWFILVHV-TDRSDARLQY-GLLIFGAAVSVLLQEVFRFAYYKLLKKADSIRQMAYVSGLSFGIISGVFSVINILADAL--GP-----------------------GVVGIGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLN-----PWYEASLLPI | |||||||||||||
2 | 5a63C | 0.15 | 0.13 | 0.85 | 1.17 | DEthreader | AFGPAFALFLITVAGDPLRVIILVAGAFFWLVSL-LLASVVWFILVHVTDRSDARLQ-Y-GLLIFGAAVSVLLQEVFRFAYYKLLKKADSIRQMAYVSGLSFGIISGVFSVINILADAL--GP-G--------------------VGIH--GDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLN--P-W--YEASLLPI | |||||||||||||
3 | 5a63C | 0.14 | 0.13 | 0.90 | 1.06 | SPARKS-K | AFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDA---RLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADRSPISIRQMAYVSGLSFGIISGVFSVINILADAL-----GPGVVGIHGDSPY---------------YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTV | |||||||||||||
4 | 5a63C | 0.13 | 0.11 | 0.87 | 1.08 | MAPalign | AFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLL-LASVVWFILVHVTDRSDARL--QYGLLIFGAAVSVLLQEVFRFAYYKLLRSPISIRQMAYVSGLSFGIISGVFSVINILADA---------LGPGVVGIHGDSP-YY--------------FLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEAS-LLPIYAVT | |||||||||||||
5 | 5a63C | 0.16 | 0.14 | 0.87 | 2.87 | HHsearch | AFGPAFALFLITVAGDPLRVIILVAGAFFWLV-SLLLASVVWFILVHVTDRSD--ARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADSIRQMAYVSGLSFGIISGVFSV----INIL--ADALGPGVVGI------HG------------DSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEA-SLLPIYAVT | |||||||||||||
6 | 5a63C | 0.16 | 0.13 | 0.81 | 1.35 | FFAS-3D | AFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSV---LLQEVFRFAYYKLLKKADEGLASAYVSGLSFGIISGVFSVINI---------------LADALGPGVV---------GIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFL---------------- | |||||||||||||
7 | 5a63C | 0.14 | 0.12 | 0.82 | 1.17 | DEthreader | TFGPAFALFLITVAGDPLRVIILVAGAFFWLVSL-LLASVVWFILVHDRSDARLQYG---LLI-FGAAVSVLLQEVFRFAYYKLLKKADSIRQMAYVSGLSFGIISGVFSVINILA-----------------------------GIHGD--SP-YYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLN-PW-YEASLLPIYA- | |||||||||||||
8 | 4cadC | 0.12 | 0.10 | 0.82 | 1.39 | HHsearch | GLMAPFIISTILIARLLINLKTIPVVFLLMPAV-ILLSILLSIPFG-GSISQFQFSGGDFVPVLFLLLLAATFEEGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIF--------------VNNSYQYE----------------IFNQSI-------WYGLNFFLSILPMGIIITWMC-LKNRKSIILAIIFHFLINLNQELLAITQD-TKIIETGVL | |||||||||||||
9 | 6u0oA | 0.09 | 0.07 | 0.77 | 1.29 | HHsearch | TDLAPLIAAIICILVQLISIERLLLALILPLI-ILIIGMYSFNTFADSFILQSTGLSVPITHILIGHILMAFVVEGFRSYLQNIVETKMNTFFASIVVGLMYSVFSA-------------------NTT--------YGT--------------EF----A----AYNFLYTFSFSM-ILGELIRATGRTIYIATTFHASMTFGLIFLFSEEIGDLFSIKVIS | |||||||||||||
10 | 4j05A | 0.06 | 0.05 | 0.82 | 0.83 | DEthreader | --------------------QI-KLVLLAGVGFFLDGELILIIVATF----RVLTWIT--ICRVFLGIGIGGDYPMSATVVSDR-A---NI-HRRGTLLCFIFANQGWGSFVGSLVTI-VTI-SG----K-HRLKSGHTGDVYDKLFQLTG-GKGLLACFTFMQFFFNGANTTTFIVAAELFPTRIRASAHGISAAAGKCGAILSSLV-FNQLKTVLWIFFTC | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |