Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LHPHRSLGRTGFLVLMAAVVLVSAVVGTAFLVQGAWPVTGFFGLDVLLLWWAFRANYRSARRYERVRLTDRELTVQRVAWKQPDRTWRFQPHWLRVSMDDPPRHESQVTLSSHGRSVVVGSFLSPDERADFARALRRAL |
1 | 4gzuA2 | 0.12 | 0.07 | 0.61 | 0.77 | DisCoVER | | GCLHK--------------------------------------------------LTKKGLQQRMFFLFSDMLLYTSKSH--FRIRGFLPLRGMLVEESNEWSVLHCFTIYAAQKTIVVA-ASTRLEKEKWMQDLNAA- |
2 | 6r9tA | 0.12 | 0.09 | 0.74 | 0.83 | DEthreader | | -ASVVCAV-TTISSNLTEMSRGVKLLAALLEDEG-GSG-RPLLQAAKGLAGAVSELLRSAQP----------------ASAEPR----------------DALLAVAAAAVKSVIATALTSQLCLVEAGRLVAKAVEGS |
3 | 4gzuA | 0.09 | 0.09 | 0.99 | 0.98 | CEthreader | | QKVCYLPLNTFLLKPVQRLVHYRLLLSRLCAHYSALKAITEVTTELQQSLTRLENLQKLTELQRMFFLFSDMLLYTSTGASHFRIRGFLPLRGMLVEESNEWSVLHCFTIYAAQKTIVVAA-STRLEKEKWMQDLNAAI |
4 | 4xh9A | 0.10 | 0.10 | 0.99 | 0.80 | EigenThreader | | SPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTDVQLLEDAILIIQGVLSESECQYYIDSGHKYIFLFQDILVLTRPTRNERHSYQVYRQPELVLEDLQDGDAKNIFRIRFHQSHTLQAN--DVFHKQQWFNCIRAAI |
5 | 4hg6A | 0.18 | 0.17 | 0.94 | 0.27 | HHpred | | -----PIYRPL--LFTFLLCLSGVLATLVRWRSVLLVVGGWAVLNVLLVGFALRAVAEKQQAAPRVQMEVP-AEAQIAGRSLTATVLDASTSGVRLLVRLPGGLGGLFQPKREGGTVMVGIFGQPIAVRTVAYLIFGE- |
6 | 4hg6A | 0.14 | 0.14 | 0.95 | 0.58 | MRFsearch | | -------PIYRPLLFTFLLCLSGVLATLVRWVAFPLVVGGWAVLNVLLVGFALRAVAEKQEVPAEAQIPNRSLTATVLDASTSGVRLLVRLGLIQFQPKFPDAPQLERMVRGRIGTVMVGVIFEAGQPIAVRETVAYLI |
7 | 2cofA | 0.13 | 0.07 | 0.55 | 0.55 | FFAS-3D | | ---------------------------------------------------------------RWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES |
8 | 1zc4B | 0.11 | 0.08 | 0.70 | 0.92 | SPARKS-K | | ----------------------------------------GQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQMYRYNALYPLDRLAVVNVKDPPMKDMFKLLMFPESRIFAE--NAKIKREWLEVLEETK |
9 | 4w9uA | 0.08 | 0.06 | 0.76 | 0.72 | CNFpred | | -------SYVAYGLVAREVERIDSGYRSMMSVQSSLVMYPIYAYGSDEQRKKYLPGLVSGELIGCFGLTEMKTRAEKID-----GGYRLSGSKMWISNSP---ADVFVVWAKSAIRGFILE------------------ |
10 | 5j65A | 0.07 | 0.06 | 0.78 | 0.83 | DEthreader | | YGPGDMT--NQFIISKQEWATIGAYIQTGLLPYCSKTSAEWWNKLYPLIIKSANDIASYGFKV--------------AGDPSIDKKDDNDNNSDD---------------DAIAKAKDFRCLIIENLRTTSLQEVQDSD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|