Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | ISVTVLALTYRKFRFSNFSYALILIFLAFHTTGAHYTYAKVPAGFWLQNWLHLNRNHYDRVIHFSFGFLLLYPMRELLVRSVAHARKQWATWLAVAALAALSSFFEIIEAVIAQIVAPDLGAAYLGTQGDIWDAQKDMAAA |
1 | 3lmdA | 0.08 | 0.07 | 0.86 | 1.00 | DEthreader | | RRPVVEITHASLMSVAAETFGELVTG-QM--RE---T---V-GPR--D----TDPIEHYTNVIRETGVLIASAGYLGAMH--AGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSPG--TDLREGVFTVLRAALDEVYRYI |
2 | 4dhdA | 0.08 | 0.07 | 0.94 | 1.00 | DEthreader | | LIYYAIEEAVLDTPLFAKEVAEVIKAIDEGERLDILFEAAFVQA---RWR---EVTDDYIKMVSLTGALIAAAAKWGVLS-VSD-DRGLAEAAWNFGMAAGVAFQIIDDVLDIYGEIG-KDIKEHKRGNAVVAVARLARYE |
3 | 5jkiA | 0.09 | 0.08 | 0.82 | 0.51 | DisCoVER | | LIVIIGAGMFFRTWDGLLMLLVFGDRLLNKVLKERVRPDFAPLVHESS------FS-FPSGHSMNAACVYPVIAYFLVKHLPFLS--KHKKMVYIIAGV-IAVLVGISRV-------------YLGVH-FVTDVLGGFSL- |
4 | 4jyxA | 0.07 | 0.06 | 0.89 | 1.00 | DEthreader | | RRIEFIYRSFQMVMMQ-ILSDATNVIAEGEVLQLMNC--NDPDT----------TEESYMEVIYSTARLFEAATLLAGVL--TKQSEAIENAMQDYGKYLGTAFQLVDDIMDYASNM-GDDLAEKPTLLYLYTKQQALKAQ |
5 | 3mkhA2 | 0.09 | 0.09 | 0.98 | 0.41 | CEthreader | | --GAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGD-YDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFD |
6 | 6hd8B | 0.05 | 0.05 | 1.00 | 0.68 | EigenThreader | | VIWYQHYIFFLQDKVTILLNTILLFVLLVYVYPLKFLARFLSEIYGGIFGIIETDLSNYGLGAFAIFLVFSLMYWRAYKMKSLLLNSYEIFDTKSSIIANLLMCSVPLLSLIITLIDPRTTILSGFLYFLYVPIMIVFGRI |
7 | 5azbA | 0.09 | 0.07 | 0.80 | 0.25 | HHpred | | -AMWLATRRANRPGWTKNEVENLLYAGFGVFLGGRIGYVLFNFPQFMADPLYLF-RVWDGGMSFHGGLIGVIVVMIIFARR-TKRSFQVFIAPLIPFGLGAGRL---GNFINGELWGRV---------------------- |
8 | 4g1uA | 0.12 | 0.12 | 0.99 | 0.30 | MRFsearch | | --STIIFTLSRWGHGNLARLLLAGIAINALCGAAVGVLTYISDDQQLRQFSLWSQAQWSTLLVASSLILPTCILGLLQARQLNLNVRQAKLRLLLLSAILIGAAVAVSGIGFIGLVVPHLIRMRIGADHRWLLPGAALGGA |
9 | 5oo7A | 0.07 | 0.06 | 0.96 | 0.54 | FFAS-3D | | -SSLSFWAGLKVQPILADEVQTFKALITIHKVLGPLIRE---YVHFLLAKLSFDPNEGYETITDLMTLQIDQFQKLIFSHFRHIGNNECRISALVPLVAESYGIYKFITSMLRAMHDNEALEPLRQRYDAQHYRLVKFY-- |
10 | 4tkrA | 0.09 | 0.09 | 1.00 | 0.88 | SPARKS-K | | IFAAVAMVLSFSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGSKQVRSNLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGLFSIVMNGASCLGTVLVSGIIIS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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