Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | GRAKWITGQAHDVPRADVLRSQFESSVSMAGIGYGYDLEEIGKAQLMGLNLSADKADAARRASEEFIDQVALFGDPAKGYSGLINNPGVTQGSAAATGTGSSTRWVDKTADQVLADVNGQLTGIYTGSSTVELADTVLLPYDQMIALSLRRIDPTSQMTLLDWIQQKNVYTIETQRPLNVFGVRGLETAGAGGTTRMVAYRRDPAVVKLWMPMPFRFFPAWQTGPFKFDVPGAFRLGGVDIRRPGAFRYLDGI |
1 | 5liiP | 0.10 | 0.08 | 0.82 | 1.17 | DEthreader | | T---------------------TVVVMKYVSDTKNMSIASGLVN--NIADPSQILTEDAIAVVAKTIEWASFYGDASELEFDGLAKLIDKNNVIN-----AKGNQ------LTEKHLNEAAVRIGK-GF--GTATDAYMPIGVHADFVNSILRQMQTGYSVN-GF-YSSRG-----FIKLHGSTVMNEVPVTLEADVFVGEMSPQVVHLFELLPMMKLPLAQINA-SITFAV-LWYGALALRAPKKWARIKNV |
2 | 5liiP | 0.11 | 0.09 | 0.82 | 1.17 | DEthreader | | TW--------------------VVVSMKYVSDTKNMSIASG-LV-NN-ADPSQILTEDAIAVVAKTIEWASFYGDSTELEFDGLAKLIDKNNVINA------KGN--Q-L--TEKHLNEAAVRIGK-G-FG-TATDAYMPIGVHADFVNSILGRQMQGYSVN-GF-YSSRG-----FIKLHGSTVMNEVPVLPEADVFVGEMSPQVVHLFELLPMMKLPLAQIN-ASITFAVL-WYGALALRAPKKWARIKNV |
3 | 3dktA | 0.13 | 0.11 | 0.84 | 2.57 | HHpred | | --LGEVEVLSDENEVVKW-GLRKSLPLIELRATFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFE-ERKIE----------CG--STPKDLLEAIVRALSIFS--KDGIEGPYTLVINTDRWINFLK-EE-A-GHYPLEKRVEECLRG-------GKIITTPRIED--------ALVVSERGGDFKLILGQDLSIGYEDREK-DAVRLFITETFT-FQVVNPEALILLK-- |
4 | 5wk1A | 0.11 | 0.10 | 0.90 | 1.20 | DisCoVER | | NQLKKVIESRRY--MDKTKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPALAEDSEEIEFTLLDDVNDYLWNGDAVAVWGGLKADASVAAYSLG--A-----DLTTATEAQVVAELLALLDVLRINK--KSGPFELYISPQIMSNWQKLAGANTNGFMNIMAAVRA-LIP----EFSVVEADSALQ------GNQVLCSVVGTRGLHAKIGMMMSSYQVPRVMNDPYQFVKWFAAGFQSNNSLKSTVYG--- |
5 | 5wk1A | 0.13 | 0.11 | 0.91 | 1.00 | MRFsearch | | GRINRSMSGQTDIDMDKTKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPALAEDSEEIEFTLLDDVNDYLWNGDAKAVWGGLKADASVAAYSLGA-------DLTTATEAQVVAELLALLDVLRIT-NKKSGPFELYISPQIMSNWQKLAANTNGFMNIMAAVRALIPE------FSVVEADSALQ------GNQVLCSVVGTRGLHAKIGMMMSSYQVPRVMNDPYQFVKWFA-AGFQSNNSKSTVYGS-- |
6 | 3dktA | 0.13 | 0.11 | 0.85 | 1.56 | SPARKS-K | | AHPLGEVEVLSDENEVVKWGLRKSLPLIELRATFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERK------------IECGS-TPKDLLEAIVRALSIFSK--DGIEGPYTLVINTDRWINFLKEE---AGHYPLEKRVEECL-------RGGKIITTPRIED--------ALVVSERGGDFKLILGQDLSIGYEDREKDA--VRLFITETFTFQVVNPEALILLK-- |
7 | 2e0zA | 0.10 | 0.08 | 0.82 | 1.26 | MAPalign | | IEGQSFRVDIIKFEDGVRVVKQEYKPIPLLKKKFYVGIRELND-----GTYDVSIATKAGELLVKDEESLVI--------REILSTEGIKKMKLS--------SWD--NPEEALNDLMNALQEASNAS---AGPFGLIINPKRYAKLL-KIYE-KSGKMLVEVLKEIF--------RGGIIVTLNIDE------NKVIIFANTPAVLDVVVGQDVTLQ-ELGPEGDDVAFLVSEAIG-IRIKNPEAIVVLE-- |
8 | 6nj8A | 0.11 | 0.10 | 0.88 | 1.16 | CEthreader | | ESHEAKMDFQGSFDTEVESSRRVNYTIPMLYKDFVLYWRDLEQSKALDIPIDFSVAANAARDVAFLEDQMIFHGSKEFDIPGLMNVKGRLTHLIGNWY----------ESGNAFQDIVEARNKLLEM--NHNGPYALVLSPELYSLLHRVH--KDTNVLEIEHVRELIT--------AGVFQSPVL------KGKSGVIVNTGRNNLDLAISEDFETAYLGEEGM-NHPFRVYETVVLRIK-RPAAICTLIDP |
9 | 5wk1A | 0.13 | 0.11 | 0.91 | 1.22 | MUSTER | | GRINRSMSGQTDIDMDKTKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPALAEDSEEIEFTLLDDVNDYLWNGDAKLKWGGLKADASVAAYSLGAD-------LTTATEAQVVAELLALLDVL-RITNKKSGPFELYISPQIMSNWQKLAGANTGFMNIMAAVRALI------PEFSVVEADSALQG------NQVLCSVVGTRGLHAKIGMMMSSYQVPRVMHNDPYQFVKWFAAGFQSNNSFSTVYGS-- |
10 | 5wk1A | 0.12 | 0.11 | 0.90 | 4.57 | HHsearch | | GRINRSMSGQTDIDMDKTKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPALAEDSEEIEFTLLDDVNDYLWNGDAKLKWGGLKADASVAAYSLG-------ADLTTATEAQVVAELLALLDVLR-ITNKKSGPFELYISPQIMSNWQK-LAGANGFMNIMAAVRALIPEF------SVVEADSALQG------NQVLCSVVGTRGLHAKIGMMMSSYQVPRVN-DPYQFVKWF-AAGFQSNNSFSTVYGS-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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