>PF09898 (307 residues) WFYASSRVQDEINHWVVREAAQGRNWSCGSLSFGGFPFRFELICEAPSLAFTGASQWKAD AARAHAVAQVWDPQHIIAEFKGPARIVETATGKELTANWSLLQASGVGANGKPERVSVSA NDYALTQGSTSLFAAKHVEVHVRHHPGDAGPTLDVAAGMHAATGPALGGTAPAPVDGELQ AQVTAVPEFRSMPLDERLRLWQGAGGRLNLVLGKLSSGGGTMVTTGNLGLDDRGRPSGEA QLSVVGPERLVAALGASGLMPADLAGFAPMVMAAGTPTQVDGRKGAAFPFQFRDGRVFLG FIPLGKI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | WFYASSRVQDEINHWVVREAAQGRNWSCGSLSFGGFPFRFELICEAPSLAFTGASQWKADAARAHAVAQVWDPQHIIAEFKGPARIVETATGKELTANWSLLQASGVGANGKPERVSVSANDYALTQGSTSLFAAKHVEVHVRHHPGDAGPTLDVAAGMHAATGPALGGTAPAPVDGELQAQVTAVPEFRSMPLDERLRLWQGAGGRLNLVLGKLSSGGGTMVTTGNLGLDDRGRPSGEAQLSVVGPERLVAALGASGLMPADLAGFAPMVMAAGTPTQVDGRKGAAFPFQFRDGRVFLGFIPLGKI | |||||||||||||||||||
1 | 3qlbA | 0.07 | 0.05 | 0.78 | 1.12 | EigenThreader | PG--------------------LDNDRTQYSLGYNDVWSSARYGHV--NSLAPDLRTLIVGDTYSLDNNAQWNLGSDYRRTREDYPIDIYNPVHTVQRADQVGVYAQQQEHWVLTVGGRQDRSRTDNRMN--DDEKFTYRTGLVYLADNGLAPYISYSTSFDPVLGTNGTPYKPTSAKQSEVKYQPP-----------------GIDLSLFDLTQENDPANVRGIELEGKLARGLDLLAALTYNDSN----------NPLE--------------KGKRPTDTPEKMA--SLWA--DYTLPEGPLSG | |||||||||||||
2 | 4u48A | 0.12 | 0.08 | 0.65 | 1.05 | CNFpred | --------------------------------------------GVVTLPIG-DFNGELRVMAQAWTADDFGRGESKVVVAAPVIAELNM--PRFLAGGDVSRLVLDVTN-RPQTLNIALAALELLSQQPQPVNLTTLFVPVRALE--GFGEGEIQATISGLNLP---GETLDAQHKQWQIGVRPAWP-----------------AQTVNSGIALAPG---ESWHVPEQHLANIPATLQGQLLLSGLARYIRELKAY--YGCLEQTTSGLFPALYT------------------------------- | |||||||||||||
3 | 6s9fA | 0.10 | 0.08 | 0.77 | 0.64 | DisCoVER | LPAAL-RIVQGPIGQSIIKE--GEPTALTCLYELPQRIQLRWRKGTLSFASI----IASDAGQYQCQLQLEAHAPINSSPGI-LEVI------EQLKFVPQPT----SKNLELDAVVAKVHCKAQGTP-TPQVQWVGTLIFRNVNSE-----H---RGNYTCLATNS--QGQINATVA----------INV--VV--T--PK---FSVPPVGPIETSEQGTVVMHCQAIG---DPKPTIQWDKDYLSE--------------------NNTDRERFRFLENGTLEIYGCTIGNSAGLKREDVQLVV- | |||||||||||||
4 | 1fi1A | 0.08 | 0.06 | 0.73 | 0.83 | DEthreader | IQVISVVTAEEMALHQ---------PKSVKEALEIMRGLLNMV-----KAGT-D--SLFQTGFD--------------RLTGLARSANAQKGSEEQRYAIAPAFTWR----DKTNFTFLSYFQNEPETNTYSRNEKMVGYSFDHE-FNDTFTVRQNLRFAENKTSQNSVDDEKLQNFSVDTQLQ-SKFA-----IDHT--L-----LTGVDFMRMRNDNKQKQTGVYVQDQAWVTLGGRYDWADQES-N-------------------------------TDKRDDKQFTWRGGVSSESFGKQ-EV- | |||||||||||||
5 | 6m0dA2 | 0.07 | 0.06 | 0.84 | 0.51 | CEthreader | HVPVSPDQNSLPLNLTMPDIPADFPQTAPDYYQTGQQNEFFSFRDPYVFLDPAHPGKTFMVFEGNTAVQRGSRSCTEADLGYSGLAVATNDELTQWKFLPPILSGNC--------VNDQTERPQIYLKDGKYYLFTISHRTTYA------AGVDGPDGVYGFVGDGI-RSDFIPLNGLSGLTLGNPTDLYQPAGAPYALNPNQNPRTFQSYSHYVMPGGLVESFIDAIGPRRGGALAPTVKININGTSTILDRTYGNAGLGGYGDIPANLPA----------------------------------- | |||||||||||||
6 | 6ofrA | 0.05 | 0.04 | 0.77 | 1.08 | EigenThreader | N---------------------DGINVIDTALSKASDRDLTLKYTGSSRDYNPQSDREMGNKSYGLAWDMDA---WVGWDHISDYTRHDHDLGHIQAVDNYTFKTRLDWQKFAVGAEYIYSDAWTERHNQNHNISP-RFMTEWDIFANQTSMITAGYNRYYGGNILGNQDLKTPYNDELAMGLQQKN-----------------VIARANYVYREAHSATTKTHSFSLSFEE--PVFSYIKSKGNLS----------LNNGY-------------EESNTGDNQVVYNDFISLN--MDFT--HQPSG | |||||||||||||
7 | 3gm8A2 | 0.10 | 0.03 | 0.32 | 0.25 | HHpred | ----------------------------------EAPHSVALASNKYSVKAGS-DEVRIEIDITDKIPCPYASNELSFHVSGPLRLLGVDNGNPTHCRCFRGKCVVLLQSEEKGKGTLTVQGTKL--------VEKKLIIEV--------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 5t98A | 0.12 | 0.07 | 0.58 | 0.52 | MRFsearch | -------------------------------------------------------GTGWYRKTFIGDAQ-WKDKIVRIGFDGGVKVGEHPYYTGFEIDITENVLAVQLTPGIYRNVWLRVDGVYVTTPTTKSKAVVQIETTVKNA-TFGNGKFNIRHSIINAQ-------GETVAILNDNVEVAA--------------------GEQGKTLAYINMLPYMYKLKTEIYDG--KDLTDTYFTDFG-----------------------------------------IRKICFTKDGFFLNGEKIRF- | |||||||||||||
9 | 4m4dA | 0.11 | 0.10 | 0.91 | 0.69 | FFAS-3D | --ITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKRGQYEFHSLEIQNCELRGSSLKLQGLSLAIS-----DSSIGVRGKWKVRKSFLKLDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDAPQAKAQVLDVMFKTMSLPEDSKQMVYFAISDYAFNIASYLKYPDMKLELLGTVVSAPILNVSPGNLSLAPQLPTSAREPVFRLGVV-----TNVFASLTF-NNSKVTGMLHPDKANVNLFQAFLNY--YLLNSLYPDVNAELA----------QGFPLPIQLHDLDFQIDFLYLG-- | |||||||||||||
10 | 6beaA | 0.08 | 0.07 | 0.88 | 0.76 | SPARKS-K | ---STVSTDPVTLNTEKTTLDQDVVINGDNKI-----TAVTIETSDLNVTFGGHD-ITATSDFVEGVKVSGNKNTITAQGEGVRTAMVIDSTGDVVVNGGNFVAKN----EKGSATGISLENLTLNG---TTINAQSTAIFAQKGNLLQGFDATDNITLADSNIINGGTAGNKTGIHTVNLNIKDGSVIANNKQTIYASASAQGAGSATQNNLSVADSTIYSDVLALSESENSASTTTNVNMNVARSY----------------------WEGNAYTFNSGDKAGSDLDINLSDSSVWKGKVSGAGD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |