>PF09843 (604 residues) LASLSRFIFRAPTWYTSLAFALVIAAMTGIVAFDSRFILDDAWQGVFLIGLPTSIASAVT PWVDRQLGGQLTPNRATLLAVICELITIAMLTIAGVIAVFTVRLGQNFVFDVLLVALASI FAFRLLILMAVSRHSLLKATIPASVQTVTAAVLLAIYSGATAFILEDPMLREYLSRPEEV PPQVQGFIPEDFIILAVICVIYALAVWLFLVVIDQPWRSSLGVSALDFLRGFIGHIAEGT RELEEFFEEIGEEAVVPVTLLSVRRPDGEEKARFVLPMIHPGPMGEIGGGNLPRRVAESA DGLAFPPHATAGHDFNLVTEREVDKILSTAETAYQNIEYDSQATAGHRVTEGEATLTGQA FGSDALVVNTYAPGCADDVEYAVGLSAMSEARADGLDDVLLVDAHNCNDGLEGDDLGHVV PGSQRSFDMLHGAGQLGSLLTDAETGQLRCGVAWDETPWKPEEGIGPLGIRVCVFEVNDQ RTAYVLIDGNNMEPGLRQRIIDAAEGVDTMEVMTSDTHIVNTVEAENQVGQVISEKEIVA LIGDLVDRAIADLEPVEAGMASEQATVTVFGNDRTETLASTANAMVSMGGALAAAFILIV MTVS |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LASLSRFIFRAPTWYTSLAFALVIAAMTGIVAFDSRFILDDAWQGVFLIGLPTSIASAVTPWVDRQLGGQLTPNRATLLAVICELITIAMLTIAGVIAVFTVRLGQNFVFDVLLVALASIFAFRLLILMAVSRHSLLKATIPASVQTVTAAVLLAIYSGATAFILEDPMLREYLSRPEEVPPQVQGFIPEDFIILAVICVIYALAVWLFLVVIDQPWRSSLGVSALDFLRGFIGHIAEGTRELEEFFEEIGEEAVVPVTLLSVRRPDGEEKARFVLPMIHPGPMGEIGGGNLPRRVAESADGLAFPPHATAGHDFNLVTEREVDKILSTAETAYQNIEYDSQATAGHRVTEGEATLTGQAFGSDALVVNTYAPGCADDVEYAVGLSAMSEARADGLDDVLLVDAHNCNDGLEGDDLGHVVPGSQRSFDMLHGAGQLGSLLTDAETGQLRCGVAWDETPWKPEEGIGPLGIRVCVFEVNDQRTAYVLIDGNNMEPGLRQRIIDAAEGVDTMEVMTSDTHIVNTVEAENQVGQVISEKEIVALIGDLVDRAIADLEPVEAGMASEQATVTVFGNDRTETLASTANAMVSMGGALAAAFILIVMTVS | |||||||||||||||||||
1 | 3k07A | 0.08 | 0.07 | 0.81 | 0.67 | DisCoVER | NTPVDALPDLPDATGVGWI--YE--YALVDRQDELKIPDVAEVASVGGVVKEY-QVV-IDPQRLAQY--GISLAEVKSALDAS--NQ--EA--GG-SSIELAEAEYMVR--AS-GYL-QTLDDFNHIVLKAENGVPVYLRDVAKVQIGPERGIAEAGGVVI--LRSGKNAREVIAAVKDKLETLKSSLPE------G-VEI-VTT-YD--RS---------------------QLI------DR-AIDNLSKLEEFVVAVVCALFLWHVRSALVAISLAFMLNANIMSLGGIAIAVGAMVDAAIVMIGRLFGPLAFTKTY--AMAGAALLAVIPILMGWNNEGDLLYMP-S--T-L---PGISAAALQTDIMVPEVARV------FGKTGKA--SAPLEMVETTIQLKPQWRMDKIIELDN---T--VRLPGL-AN--LW--VPPISALAERLERYINVEINAYFAVGGAMVGETVEGIARYPINLRYPWRAL--R-------------------QLPILTPMKQQITLADVA---DIKVST-GPS-MLK-WIYIDMTAVIIAGLLPIGGA--GSEVMSRIAAPMIGGMITAPLLSLFIIPAA- | |||||||||||||
2 | 2zxcA1 | 0.10 | 0.06 | 0.60 | 0.79 | CEthreader | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLPYRFGLGKADITGEAAEVGMMGYSSLEQKT--AGIHMRQWARAFVIEEAASGRRLVYVNTDLGMIFQAVHLKARLKAKYPGVYDENNVMLAATHTHSVLGFQEKTFNAIVDGIVRSIERAQARLQPGRLFYGSGELRQMSVLSFVDALAGAISWFPVHSPDNKGYASYHWEHDVSRKSGFVAAFAQTNAGNLSPNLNLKPGSGPFDEIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDTGNKKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVAGVRIRRAVQAASEAAGIRHVVFNGYANAYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDLSCCQMNFQTG--------------------------- | |||||||||||||
3 | 2zxcA1 | 0.07 | 0.03 | 0.50 | 0.90 | EigenThreader | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DGKADIARAFVIEEAASGRRLVYVNTDLGMIF--QAVHLKVLARLKAKYPGVYDEATHTHSFSHYGFQEKTFNAIVDGIVRSIERAQARLR---NASRNRSGIDMSVLSFANGAISWFPVHSTSMNHLISPDNKGYASYHWEHDVSFVAAFAQTNAGNLNLNLKPGSGPFDNE-FDNTREIGLRQFAKAYEIAGQASRFRFVDFTRTGNKKPYPWTPTVLPQMFRIGQLELLGAPAFTVMAGVRIRRAVQAASAGIRHVVFNGYANAYAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVEG----------------------------------------------- | |||||||||||||
4 | 2zxcA1 | 0.12 | 0.05 | 0.37 | 0.36 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGYSSL-EQKTAGIHMRQWARAFVIAGRRLVYVNTDLGM---IFQAVHLKVLARLKAKPENNVMLAATHTHSGPGGFSHYSVLGFQEKTFNAIVDGIVRSIERAQ-ARLQPGRLFYGSGERNASRNRDGIDPQMSVLSFVDNGELAGAISWFPANISPDNKGYASYHWEDVGFVAAFA------QTNANLSPNLNKNETREIGLRQFAKAYEIAGQAQEEELDSRFRFVDFTIRPE-------------------------------- | |||||||||||||
5 | 3jacA | 0.11 | 0.07 | 0.67 | 0.37 | MRFsearch | --GGGGFFHDITDVYALMFLADIVDIIIIIFGFWASLSDDQVPQAFLFMLLVQFGTMVIDRALYLRK--TVLGKLAFQVVLVVAIHIWMFFILPAVTERMFS---QNAVAQLWYFVKCIYFALSAYQIRCGYKYNHLNLFLFQGFRLVPFLVELRAVMANIFIIKCSRETEKKYPQPKGQ------KKKKIVKYGMGGLIILFLIAIIWFPLL--------------------------------FMSLINQPIDVTVTLKLGG---YEPLFTMSAQQ----------------------------------PSIVPFTPQAYEELSQQFDPY------------PLAMQF----ISQYSPEDIVTAQIEGSSGALWRISPPSRAQMKQELYNG-TADITL---------------------------------------------RFTWNFQRDL-------------AKGGTVEYTNEKHTLELAP----NSTARRQLAQLLEGYLGVRIQLRR-------------------------------------FLEWWVIELQDLPMVIFSDKVSPPSLGFLAGYGIVGLYVSIVLVVGKFVRG | |||||||||||||
6 | 5u71A1 | 0.08 | 0.07 | 0.84 | 0.95 | FFAS-3D | ---------KNPKLINALRRCFFWRFMFYGIF-------------LYLGEVTKAVQPLLLGRIIASYDPDNKEERSIAIYL--GIGLCLLFIVRTLLLHP-------AIFGLHHIGMQMRIAMFSLIYKKTLKLSSRVLDLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWELLQASAFCGLGFLIVLALFSGFFVVFLSVLPYALIKGIILRKIFTTVTRQFPWAVQTWYDSLGAINKIQDFLQKQTEVVMENVTAFWEPERGQLLAVA-----GSTG-AGKTSLLMVIMGELEQFSWIMPGTIKENIVSYDEYRYRSVIKALEEDISKFAEGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD--VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAHEGSSYFYGTFS--ELQNLQPDFSSKLMTTWNTYLRY---------------------------------------ITVHKSLIAEVAASLVYVFYIYVGVADTLLAMGFFRGLPL-----VHTLITVSKILHHKMLHSVLQAPMST---------LNTLKAGGILNRFSKDIAILDIQLLLIVIGAIAV- | |||||||||||||
7 | 5lq3A | 0.08 | 0.07 | 0.85 | 0.76 | SPARKS-K | QAKMQELSKNFPKTTKFVIESIKEVVKTFVEALILVIIVMYMFLATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEKDAAIQAMQEPVISIVLVLCAVFVPVSFIS-GFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFK-------FVKKFNDFFDWSTSVFSAGVAYILKRTI------RFVLIFCIMLGAIFYLYKAVPNSL---VPEEDQGLMISIINLPSA-------------------------------------------------SALHRTISEVDHISQEVLKTNG---------VKDAMAMIGFDLFTSAAMFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMQNKSGKSYDEIQKDVNKLVAAANQRKETTLDTTFPQYKLIIDRHYNLTIGTYYVNDFSMLGKNFQVNIRAKGDFTQDALKNILDSFLTLQPDDVKRFNLFPAAQVQGQPA--PGYTSGQAIEAIAQVAKETLG--DDYSIAWS---------G--SAYQEVSSKGTASYAFALGMIFVFLILAAQY | |||||||||||||
8 | 5t0oA | 0.08 | 0.07 | 0.84 | 1.46 | CNFpred | GLTYKIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLG--FSINLLTLFALILAIGIVVDDAIIVVENIDRIL-VKDAAIQAMQEVSSPVISIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFK-----FVKKFNDFFDWSTSVFSAGVAYILKRTI------RFVLIFCIMLGAIFYLYKAVP-------------NSLVPEE----DQGLMISIINLP-----------------------------------SASALHRTISEVDHISQEVLKT--------------NGVKDAMAMIGFAAAMFIGLQDWDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNGKSYDEIQKDVNKLVAAANQR---KELSRVRTTLDTTFPQ-NATIGTYYVNDFSMLGKNFQVNIRAKG-NTQDALKNIFVRSNDGKMIPLDS-DDVKRFNLFPAAQVQGQPTSGQAIEAIAQVAKETLG-----------DDYSIAWSGSYQEVSSKGTASYAFALGMIFVFLILAAQYERW | |||||||||||||
9 | 4wgkA | 0.09 | 0.04 | 0.52 | 0.67 | DEthreader | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADI----N--------------S--GQNAQGILTRLYSRAFIMAEPDGSNRTVFVSIDIGMV------SQRLRLEVLNRLRRNVILSGTHTHSGPAYFSNQTFQHMVTGILKSIDIHNMKPGKIFINKGNVDGKEMIVLKMVDLGLISWFAIHPVSMDNVGYASYLLEQEKNKGYGPFVAAFASSLGDVSNIAKGPGDMFDSQIIGRAMYQRAKELYASA--SQEVTGPLASAHQWVDMTKPALHPIVDVQIITLG----SLAITAIPGE-FTTMSGRRLREAVAANMTVVISGLCNVYTHY-YEASTIYGPHTLSAYIQLFRNLAKAIATDTV--------QTHQTFD-WTRFYWHK-------------------------- | |||||||||||||
10 | 1b3uA | 0.10 | 0.09 | 0.86 | 0.60 | MUSTER | IAVLIDEL-RNEDVQLRLNSIKKLSTIALAL---GVERTRSELLPFLTDTIDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR-DKFTELQKAVGPEITVPAFQNLMKDCEAEVRAAAS---------------HKVKEFCENLSADC-------------RENVIMSQILPCIKELVSD-ANQHVKSALASV----IMGLSPILGKDNTLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS---------QSLLPAIVELDAKWRVRLAIIEYMPLLAGQLGVEFFDSLCMAWLVDHVYAIREAAT--SNLKKLVEKFGKEWA----------HATIIPKVLAMSGDPNYL-------HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA-----------------NVRFNVAKSLQKIGPILDNSTLQSEVKPILEK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |