Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | QVLLSERNCIEIVTKLIAEKQLEVVHTLDGKEYVTPAQISREIRDELHVCGGRVNIVDLQQVINVDLLHIENRANDIVKSEKTIQLVLGQLINQSYLDQLAEEINDKLQETGQVTISELCKAYDLPGDFLIQALSRRLGRIIHGQLDQENRGVIFTEAFVSRHRARIRGLFTAITRPTPVSNLITRYGFQEHLLYSVLEELVNSGRLKGTVVGGRQDKAVFVPDIYARTQSNWVDSFFKQNGYLEFDALYRLGIPDPAGYI |
1 | 1lvaA | 0.11 | 0.08 | 0.80 | 1.02 | HHpred | | -------------------------------------SPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA-A-AGQVTLLRLYAISTERYQAWWQAVTRALEERPGLAREELRSRYFSPARVYQALLEEWSRERL--QLA---ANTVALAETQKKLLKDLEDKYRVSWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV-KINDE-----FYWHRQALGEAREVIKN-LASTGPFGLAEARDLGSSRKYV-- |
2 | 2xubA | 0.10 | 0.09 | 0.91 | 1.13 | MAPalign | | -------MTQAEIKLCSL------------LLQEHFGEIVEKIGVHLIRT-GSQPLRVIAHDTGTSLDQVKKALCVLVQ-HNLVSYQVVEYEARVLYSDTGELIVEELLLNGKLTVKKVADRLTMDYAEVSNTFVRLA-DTHFVQRCPSVGIYWQANRFMDQTSSEIVRTMLRMTQPLSSNEIFRSLNISKQVLDQYLTLLADDPLEFVGKSGDS-GGGMYVINLASLATATLESVVQERSRCARIFRLVLQEQKQVEDFA |
3 | 1lvaA | 0.11 | 0.09 | 0.81 | 1.01 | HHsearch | | ---------------------------------GSPE---KILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA-A-AGQVTLLDLYAISTERYQAWWQAVTRALEERPGLAREELRSRYFSPARVYQALLEEWSREG-RLQLA---ANTVALSETQKKLLKDLEDKYRVSWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV---KIN--DEFYWHRQALG-EAREVIKN-LASTGPFGLAEARDLGSSRKLPLL |
4 | 5yfpC | 0.08 | 0.07 | 0.88 | 1.00 | DEthreader | | RLLVETGCPHLLEIHLL-A-FLLDIMQISLAIFKHNGINNSISEMFGEMREVLMDFNELIIVKEHIANNIFEVYF-DQ-----YYK----ELHS-LITDLVES-EPET-----IIIL-DIL-AFDKTFIGDKEKETLFK--D-YLN-------LIVV-KMTEWIGNLEKAEFDVFPPHLFLDGTKTCMFTVVRFSDLLTKRQKNISKISLVSQGTLDGFAVASSGLITLMFDDLRPQAQQIADLDELLDIKMFFIDVIGET |
5 | 5ue8A | 0.09 | 0.08 | 0.87 | 0.83 | DEthreader | | ------SKYMCDQLHNSLRIDLSMYFPASSRLLCVKACLNSTYEYIFCPFWSLITIVSIIE--EDKNTVGKISAEVMWSLAQKVLYNEYVAEYPAWFEPFVIQWLDENEEVSQLQSFEII------KK-LECPDPQIVGHYMRRF----------AKTISNVLLQYADIVSKFYCEPCILMNNTQ-Q-LRVQLEKLKLQVKLN-NVLDELS--A--EKTVLKRV-LKELWKLVMNTMEIVVELLDKQYFHAGLKKTLEKSQ |
6 | 5lzbz | 0.17 | 0.09 | 0.55 | 0.57 | HHpred | | LPMEDEALVLLLIEKMRESGDIGWLHLPDHKAGFSEEQIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQ-GIITIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYRIGFTRRDHLL------------------------------------------------------------------------------------------------------------------ |
7 | 1lvaA | 0.09 | 0.07 | 0.80 | 0.97 | DisCoVER | | --------------------------------------PEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQ-SA-AAGQVTLLDLYAISTERYQAVTRALEEFHSRRPGLAREELRSYFRLPARVYQALLEEWSR-EGRLQL---AANTVALAGFTPSFLKDLEDKYRVRWQPPSFKEVAGSFNLDPSELEELLHYLVRE--GVLVKI----NDEFYWHRQALGEAREVIKNLA-STGPFGLAEARALYVLPLLEL- |
8 | 1lvaA | 0.16 | 0.13 | 0.80 | 0.78 | MRFsearch | | ---LSLEETRKLLQSAAA-GQVTLLRVENDLYAISTERWWQAVTRALEEFHSGLAREELRSRYFLPARVYQALLEEWSRE-GRLQLAANTVALAETQKKLLKDLEDKYRVSRPPSFKEVAGSFNLDPSELEELLHYLVR---EGVLVKINDEFYWHRQALGEAREVIKNLAS--TGPFGLAEARDALGSSRKYVLPLLEYLDQV--KFTRRVG---DKRVVVGN------------------------------------- |
9 | 1lvaA | 0.13 | 0.10 | 0.82 | 0.71 | SPARKS-K | | ------------------------------------GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSA--AAGQVTLLRLYAISTERYQAWWQAVTRALEEFHGLAREELRSRYRLP-ARVYQALLEEWSREGRLQLAAN---TVALSETQKKLLKDLEDKYRVSRQPPSFKEVAGSFNLDPSELEELLHYLVREGVL---VKINDE---FYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRVLPLL |
10 | 5lzbz | 0.12 | 0.11 | 0.92 | 1.03 | MAPalign | | ---VDEARVDEVERQVKEEAKLDSLWLTGVNKPMRVQSDADALSVHLER--GAVNLADFAWARQLNGEGMRE-LLQQ----PGYIQAGYSLLNAPVAARWQRKILDTLATYHGPGRERLRRMALEDEALVLLLIEKMR-ESGDIHS---HHGWLHLPEEQQAIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQ--QGIITAIV----KDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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