>PF09728 (308 residues) KTIDQLMKFLANYGTAEEKLQALYKKHLEVLEEQRNFESRIKQSERHNIQLTREKEQLQA DHNRAVLAKSKLESLCRELQRQNKAIKEESLLRIREEEEKRKELVGKFQTTLNDISTLMQ ENQQKSTQLKEENIELAQKLKSLVDHYDLWEKHMGKVVRQKELESQLAKAKLAKTMLQLK QERENFLKEKHQLLENINELQKRSTELASTELKLRNELSLYTSKYDEFQGVLRKSNDVFS SFKSDMDAMSKKIKKLQKETGQWKTRWESSNRALIEMAAEKQKRDQELLTSQQRVLTLEK LCRALQTE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KTIDQLMKFLANYGTAEEKLQALYKKHLEVLEEQRNFESRIKQSERHNIQLTREKEQLQADHNRAVLAKSKLESLCRELQRQNKAIKEESLLRIREEEEKRKELVGKFQTTLNDISTLMQENQQKSTQLKEENIELAQKLKSLVDHYDLWEKHMGKVVRQKELESQLAKAKLAKTMLQLKQERENFLKEKHQLLENINELQKRSTELASTELKLRNELSLYTSKYDEFQGVLRKSNDVFSSFKSDMDAMSKKIKKLQKETGQWKTRWESSNRALIEMAAEKQKRDQELLTSQQRVLTLEKLCRALQTE | |||||||||||||||||||
1 | 4k1pA1 | 0.09 | 0.06 | 0.69 | 1.13 | EigenThreader | NT----------LSNSIRMLGSQSPLIQAYGLVILQQVNAMSSLTNHQKFAKANVREWIDEY--NPKLIDLNQEMMRYSIRFNSYYSKLYELAGNINED--------------------------EQSKADFTNAYGKLQLQVQSIQENMEQDLL--------ELNRFKTVLDKDSNNLSIKADEAIKTLQQVSSFTELIDRQITTLETLLTDWKVLNNNMIQIQKNVEEG---------------------------------------------------TSSLLQKHFNQIKKVSDEMNKQTNQF | |||||||||||||
2 | 2tmaA | 0.10 | 0.09 | 0.91 | 2.08 | FFAS-3D | -------------------MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADV-ASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKV--------IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND | |||||||||||||
3 | 6yvuB | 0.12 | 0.12 | 1.00 | 1.32 | SPARKS-K | REKNSLESGKETALEFLEKEKQLTLLRSKLFQFKLLQSNSKLASTLEKISSSNKDLEDEKMKFQESLKKVDEIKAQRKEIKDRISSCSSKEKTLVLERRELEGTRVSLEERTKNLVSKMEKAEKTLKSTKHSISEAENMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSKTKNISAEIIRHEKELQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQELQDLILDLKKKLNSLKDERSQGEKNFTSAHLKLKEMQKVLNAHRQRAMEARSSLSKAQNKSKVLTALSRLQKSG | |||||||||||||
4 | 2tmaA | 0.12 | 0.11 | 0.91 | 1.12 | CNFpred | ------------MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQ-LVEEELDRAQERL--------------ATALQKLEEAEKAADESERGMKVIE-SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND | |||||||||||||
5 | 6h2xA | 0.13 | 0.03 | 0.25 | 0.65 | DisCoVER | -RQQENEARA---EAAELEVIAALNRAKELC--LPDL--TADCAAEWLETF------------------------------------------------------------------------------------------------------------------------------------QRDARQQAFAL-TE--VVQRR---------------------------------------------------------QAEAERTRAREALRGHA------------------------------ | |||||||||||||
6 | 6vr4A | 0.06 | 0.04 | 0.63 | 0.67 | DEthreader | --------VT-EGLGLQGGDLVQ-DNGSISIVDQLADKLNVFTSILASIYTTGPFRVPAYFYLKYSQKLQQD-LP-VK-TIKPT--------------------LERELDKGSAINLL-PGIKDKLY-NIVFSKINSAAVKLKTNGGSAIGYSNDPLKTDLITPID-F-PHVKDEIKRVFGDN-QK-DPLYQLKLKFT-----------------------------------------------------D-NRSKIKDTISAFLNFVDNPINDNNTDTQYES---------K---------SV--- | |||||||||||||
7 | 6djlB | 0.10 | 0.07 | 0.72 | 0.54 | CEthreader | ----------------------VDPRIQGELEKLNQSTDDINRRETELEDARQKFRSVLVEATVKLDELVKKIGKAV-------------------------------------------EDSKPYWEARRVARQAQLEAQKATQDFQRATEVLRAAKETISLAEQRLLEDDKRQFD-------------SAWQEMLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERR--------- | |||||||||||||
8 | 6djlB | 0.08 | 0.05 | 0.69 | 1.12 | EigenThreader | PRIQGELEKL----------NQSTDDINRRETELEDARQKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQDFQRATEVLRAAKETISLAEQRLLEDAWQEMLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKPYFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERR-------------------------------------------------------------------------------------- | |||||||||||||
9 | 2tmaA | 0.12 | 0.11 | 0.89 | 0.83 | HHpred | --------------AIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKK---------------ATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERVIESRAQKDEEKMEIQEIQLKEAKHIAE----DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND | |||||||||||||
10 | 6yvuB | 0.12 | 0.12 | 0.99 | 0.50 | MRFsearch | --LLEYLEDIIGTANYKPLIEERMGQIENLNEVCLEKENRFEIVDREKNSLESGKETKEKQLTLLLQSNSKLASTLEKISSSNKDLEDEKVDEIKAQRKEIKDRISSCSSKEKTLVLERRELEGTRVSLEERTKNLVSKMEKAEKTLKSTKHSISEMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSLKDKTKNISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQELQDLILDLKKKLNSLKDERSQGEKNFTSAHLKLKEMQKVLNAHRQR | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |